BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0001.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9LCR0.1 Q9LCR0_PAEPO OrfX                                            161   2e-38
B3K704.1 B3K704_9BACI Putative uncharacterized protein                150   2e-35
B1DL73.1 B1DL73_9BACL Putative uncharacterized protein                125   2e-27

>Q9LCR0.1 Q9LCR0_PAEPO OrfX
          Length = 90

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 84/88 (95%)

Query: 1  MKCISVYTDNFEAFSDIFERVVESPLEENEEQEVEGITISHSGDVPEHYLERMSQKPEVV 60
          MKCISVYTDNFEAFSDIFE++V +   ENEE+E+EGIT+SHSGDVPEHYLERMSQKPEVV
Sbjct: 1  MKCISVYTDNFEAFSDIFEQIVTTEFAENEERELEGITVSHSGDVPEHYLERMSQKPEVV 60

Query: 61 VMRDKSRGLTILQHGKVFEILLPVLETA 88
          VM+DKSRG+TILQHG+VFEILLPVLETA
Sbjct: 61 VMKDKSRGITILQHGQVFEILLPVLETA 88


>B3K704.1 B3K704_9BACI Putative uncharacterized protein
          Length = 93

 Score =  150 bits (380), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 77/90 (85%), Gaps = 2/90 (2%)

Query: 1  MKCISVYTDNFEAFSDIFERVVESP--LEENEEQEVEGITISHSGDVPEHYLERMSQKPE 58
          MKCISVYTDNFE FSDIFE VVES   L ENEEQEVEG+T SHSGD PEHYLERMSQKPE
Sbjct: 1  MKCISVYTDNFELFSDIFEHVVESQNQLSENEEQEVEGVTFSHSGDAPEHYLERMSQKPE 60

Query: 59 VVVMRDKSRGLTILQHGKVFEILLPVLETA 88
          VVVMRDKSRGLTILQHG VFEIL+P  E  
Sbjct: 61 VVVMRDKSRGLTILQHGNVFEILIPAEENT 90


>B1DL73.1 B1DL73_9BACL Putative uncharacterized protein
          Length = 89

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 1  MKCISVYTDNFEAFSDIFERVVESPLEENEEQEVEGITISHSGDVPEHYLERMSQKPEVV 60
          MKCISVYT++FE FSDIFE+V+E+P +ENE+  VEG+T+S SGDVP+ Y+ERM QKPEVV
Sbjct: 1  MKCISVYTNSFELFSDIFEQVLEAPPQENEDILVEGVTVSGSGDVPDQYIERMRQKPEVV 60

Query: 61 VMRDKSRGLTILQHGKVFEILLPVLETA 88
          VM++K R + ILQHG VFEI LP  E A
Sbjct: 61 VMKEKERNIMILQHGNVFEICLPAEEEA 88


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 513,425,746
Number of extensions: 18455678
Number of successful extensions: 71796
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 71795
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)