BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0021.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9Y8M5.1 B9Y8M5_9FIRM Putative uncharacterized protein 149 2e-34 B1ZY98.1 B1ZY98_OPITP Beta-lactamase domain protein 119 3e-25 B6FLP1.1 B6FLP1_9CLOT Putative uncharacterized protein 107 1e-21 B4BFM4.1 B4BFM4_CLOTM Beta-lactamase domain protein 107 1e-21 B3KAZ5.1 B3KAZ5_9BACI Beta-lactamase domain protein 102 4e-20 >B9Y8M5.1 B9Y8M5_9FIRM Putative uncharacterized protein Length = 281 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 143/246 (58%), Gaps = 7/246 (2%) Query: 26 KVQKLDDDLYIITEAGLVHFYLVLGQKKAVLIDAGFGFGDIRPIIRSITDLPVMLVLTHG 85 +++KL +DLY I E V+ Y++LG++KA+++D G+G+GD+ IR ITD P++ +THG Sbjct: 5 RIEKLHEDLYCIRETESVNIYVILGEEKALVLDTGYGYGDLIGEIRKITDKPLVAAVTHG 64 Query: 86 DPDHSYGSEYFGDVWLYQPDYGQIMGFDTKHERQFAAELGVKYLKENNPEAIERFDSKAF 145 DPDH+ GS +F V++ D ++ FD QF L + Y P+ + + +AF Sbjct: 65 DPDHAMGSFHFDQVYINPADLPDLIAFD---HPQF-KRLTLDYRLHKMPQLKGKINEEAF 120 Query: 146 AEKSLLRVLTPHFVKDGELFDLGGKTLEVVYTPGHSYGHIMLLDRAKKRLFSGDMICDYV 205 SL V +++ ++ DLGG +LEV+ PGHS G + + ++ LF+GD I Y Sbjct: 121 MATSLAEVQFLPLLEN-DVLDLGGLSLEVIAIPGHSQGSVAFYESQRQWLFTGDTITAYN 179 Query: 206 IIYFFESDRN-APFSMALDSWKKIKRLEKDIKDIYSSHGQYPITMEWVDAYIECFSGEFQ 264 I ++ +P S+ + S+KKI + I++IY +HG+ P+ E +D+ + C + Sbjct: 180 IWNHSAFPQHCSPLSVLMASYKKIAAMRDQIQEIYPAHGEKPLGTEIIDSDMACVR-DLC 238 Query: 265 QNYLKD 270 +NY D Sbjct: 239 RNYAGD 244 >B1ZY98.1 B1ZY98_OPITP Beta-lactamase domain protein Length = 298 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 23/228 (10%) Query: 37 ITEAGLVHFYLVLGQKKAVLIDAGFGFGDIRPIIRSITDLPVMLVLTHGDPDHSYGSEYF 96 I + G V+ YLV+G+ +A+LID G+G ++R ++S+T LP+ ++ THG DHS F Sbjct: 52 IVDHGTVNVYLVIGRDRALLIDTGYGQANLRQYVQSLTSLPLTVINTHGHLDHSGADLQF 111 Query: 97 GDVWLYQPDYGQIMGFDTKHERQFAAELGVKYLKENNPE--AIERFDSKAFAEKSLLRVL 154 G V D+ I ER + V+ + +P+ A ERFD A A R L Sbjct: 112 GTVLADPADFAGI-------ERTADS---VRRESKPDPKLPAAERFDYGANA-----RPL 156 Query: 155 TPHFVKDGELFDLGGKTLEVVYTPGHSYGHIMLLDRAKKRLFSGDMICDYVIIYFFESDR 214 VKDGE+ DLGG+ LEV+ TPGH+ G I+LLDRA+K LF+GD I V + R Sbjct: 157 ALKPVKDGEIIDLGGRQLEVITTPGHTPGEIVLLDRAQKLLFAGDHINRLVWLQL----R 212 Query: 215 NA-PFSMALDSWKKIKRLEKDIKDIYSSHGQYPITMEWVDAYIECFSG 261 N P L S +KI + I H + P + I C G Sbjct: 213 NCLPLEAYLASLEKIAARADEFTTIMPGHNE-PFDRGVLAEKITCVKG 259 >B6FLP1.1 B6FLP1_9CLOT Putative uncharacterized protein Length = 254 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 18/247 (7%) Query: 27 VQKLDDDLYIITEAGL---VHFYLVLGQKKAVLIDAGFGFGDIRPIIRSITDLPVMLVLT 83 V+K+D++ + I+E H YL+ G +KA+LID G G +I+ I S+T LP+M++ T Sbjct: 7 VEKIDNNTFAISEYKHWEETHCYLLCGNEKAILIDTGLGVENIKEITDSLTKLPIMVITT 66 Query: 84 HGDPDHSYGSEYFGDVWLYQPDYGQIMGFDTKHERQFAAELGVKYLKENNPEAIERFDSK 143 H DH G ++F ++ +Y+ + + +F L V +K+N F S Sbjct: 67 HVHWDHIGGHKFFDNIAVYEAEKNWLA-------VKFPIPLPV--VKQNLMCKECDFPSS 117 Query: 144 AFA-EKSLLRVLTPHFVKDGELFDLGGKTLEVVYTPGHSYGHIMLLDRAKKRLFSGDMIC 202 A + L + + + DG+ DLGG+ L V++TPGHS GH ++ +K L+SGD+I Sbjct: 118 FNANDYQLFQGIPQKILHDGDCLDLGGRKLTVIHTPGHSPGHCCFYEQERKYLYSGDLIY 177 Query: 203 DYVIIYFFESDRNAPFSMALDSWKKIKRLEKDIKDIYSSHGQYPITMEWVDAYIECFSGE 262 + F+ + F L S KKI+ LE IK I +H Q I + ++ FS Sbjct: 178 SGCLDVFYPTTDPEAF---LQSVKKIQVLE--IKKILPAHHQLNIPVNIINRIETGFSKL 232 Query: 263 FQQNYLK 269 + LK Sbjct: 233 ADEGKLK 239 >B4BFM4.1 B4BFM4_CLOTM Beta-lactamase domain protein Length = 258 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 30/221 (13%) Query: 26 KVQKLDDDLYIITEAGLVHFYLVLGQKKAVLIDAGFGFGDIRPIIRSITDLPVMLVLTHG 85 KV+K+DD ++++ + G YLV G+KKAV+ID G D+ ++R IT LP+ +V THG Sbjct: 6 KVKKIDDCVWLMDDNGEATGYLVCGEKKAVVIDTMNGIADVHAVVREITSLPLTVVNTHG 65 Query: 86 DPDHSYGSEYFGDVWLYQPDYGQIMGFDTKHERQFAAELGVKYLKENNPEAIERFDSKAF 145 DH +G+ YF PD +I AAE +K+ PE +E K Sbjct: 66 HCDHIFGNVYFDCDCFLHPDDAKI-----------AAE-HIKF-----PEFVELCQKK-- 106 Query: 146 AEKSLLRVLTPHF--VKDGELFDLGGKTLEVVYTPGHSYGHIMLLDRAKKRLFSGDMICD 203 +V P F + DG+ DLGG LEV+ PGH+ G I LL + K+ LF+GD I Sbjct: 107 ------KVEMPPFKAINDGDAIDLGGLILEVISLPGHTPGGICLLLKEKRILFTGDSINH 160 Query: 204 YVIIYFFESDRNAPFSMALDSWKKIKRLEKDIKDIYSSHGQ 244 ++ + ES + F L++ +I + ++ I H Q Sbjct: 161 HLWMQLKESLQLKTF---LENLNRISWVTENADRILHGHAQ 198 >B3KAZ5.1 B3KAZ5_9BACI Beta-lactamase domain protein Length = 268 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 126/237 (53%), Gaps = 16/237 (6%) Query: 27 VQKLDDDLYIITEAG---LVHFYLVLGQKKAVLIDAGFGFGDIRPIIRSITDLPVMLVLT 83 V +LD+ + I+E G VH +L++G ++A LID G G D+R I +TDLP+M++ T Sbjct: 17 VSQLDEGTFAISEYGHWEKVHSFLLIGDERAALIDTGLGIDDMRRITDQLTDLPIMVLTT 76 Query: 84 HGDPDHSYGSEYFGDVWLYQPDYGQIMGFDTKHERQFAAELGVKYLKENNPEAIERFDSK 143 H DH +G++++++ + ++ K L ++ ++++ I + Sbjct: 77 HVHADHIGSHGQYGEIYVHKAEEDWLVSGIKK--------LSIEQIRKDISRDITKPVPD 128 Query: 144 AF--AEKSLLRVLTPHFVKDGELFDLGGKTLEVVYTPGHSYGHIMLLDRAKKRLFSGDMI 201 +F A + R ++DG++ +LGG++L + +TPGHS GHI + + + LF+GD++ Sbjct: 129 SFDPAAYTPYRGQPTGLLRDGDVIELGGRSLVIYHTPGHSPGHIAVFEPNRGYLFTGDLL 188 Query: 202 CDYVIIYFFESDRNAPFSMALDSWKKIKRLEKDIKDIYSSHGQYPITMEWVDAYIEC 258 D +Y F +P + ++S ++I +E + I+ SH + W+D E Sbjct: 189 YDETPVYAFYP-TTSPEDL-VNSLERIANIEG-VNRIFGSHNTLGLDPAWLDLVKEA 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,859,680,464 Number of extensions: 79212471 Number of successful extensions: 164232 Number of sequences better than 1.0e-05: 100 Number of HSP's gapped: 164236 Number of HSP's successfully gapped: 107 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)