BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0017.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAT6.1 B1DAT6_9BACL Binding-protein-dependent transport system... 505 e-141 B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport system... 273 2e-71 B3K492.1 B3K492_9BACI Binding-protein-dependent transport system... 268 6e-70 B5YAV4.1 B5YAV4_DICT6 Transmembrane lipoprotein 265 5e-69 B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport system... 265 5e-69 >B1DAT6.1 B1DAT6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 327 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/327 (75%), Positives = 277/327 (84%), Gaps = 3/327 (0%) Query: 37 MQLDTQLTSPQADS---GRLWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYS 93 M+L T++T + +LWKRFKKQK LHLFVGLGM+FL++F+YTPMFGILMAFK YS Sbjct: 1 MELGTRVTGTTGKTEARAQLWKRFKKQKTLHLFVGLGMIFLLVFAYTPMFGILMAFKQYS 60 Query: 94 ISSGIKGIFTSDWVGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEV 153 IS+GIKGIFTS+WVGLK+F EFV+DYQFG IVRNTL+LS LKV FAFPAPILLAI+L+EV Sbjct: 61 ISTGIKGIFTSEWVGLKHFKEFVNDYQFGMIVRNTLVLSLLKVFFAFPAPILLAILLSEV 120 Query: 154 KNMAFKRFVQTVSYLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPN 213 KN FKRFVQTVSYLPHFISWVVV G+++AFLS DVG+VNKAL+ LG I +PL++LT+PN Sbjct: 121 KNAQFKRFVQTVSYLPHFISWVVVAGIAFAFLSTDVGMVNKALLGLGLIDKPLDVLTNPN 180 Query: 214 YFWGLAVGSAIWKEMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXX 273 YFWG A GSA+WKEMGWWTIIFLAAI GINP+LYEAA+IDGAGRLARIRHIT PGMK Sbjct: 181 YFWGFATGSAVWKEMGWWTIIFLAAIAGINPSLYEAAQIDGAGRLARIRHITFPGMKGTI 240 Query: 274 XXXXXXXXXXXXXXXXXXXNFEQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAID 333 NFEQA+LFGNSINNPTSEIVQTYAFKVGLRDGRFSYAA+ID Sbjct: 241 VVVLILTIGSILGGGLVGSNFEQAFLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAASID 300 Query: 334 LIQSVISVILIFSSNFIAKRMSGSSLF 360 LIQSVISVILIFSSN+IAKR SGSSLF Sbjct: 301 LIQSVISVILIFSSNYIAKRTSGSSLF 327 >B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 145/326 (44%), Positives = 208/326 (63%), Gaps = 12/326 (3%) Query: 36 HMQLDTQLTSPQADSGRLWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSIS 95 + +D++ +P GRL +RF KQ + L V M+F+++FSY PM+G+LMAF+DYS+ Sbjct: 3 QIGIDSRAETP-VKKGRL-RRFLKQWDIQLMVLPAMMFILVFSYIPMYGVLMAFQDYSL- 59 Query: 96 SGIKGIFTSDWVGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKN 155 KG S WVG K+F+ F +F I+RNTL++S LK+ FPAPILLA+MLNEV Sbjct: 60 --FKGFLNSPWVGFKHFEMFFEAPEFWTIMRNTLVISLLKLCIGFPAPILLALMLNEVGR 117 Query: 156 MAFKRFVQTVSYLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYF 215 +FKR VQT+SYLPHF+SWV+V G + + LS D G +N L L I EP+N L+ P YF Sbjct: 118 RSFKRIVQTISYLPHFLSWVIVSGFAISILSTDNGSLNILLQKLSLIDEPINFLSEPKYF 177 Query: 216 WGLAVGSAIWKEMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXX 275 W + + +WKE+G+ +I++LAAI GINP LYEAA IDGA RL +I IT+P + Sbjct: 178 WSILTVTNVWKEIGFSSIVYLAAIAGINPQLYEAASIDGASRLKQIISITIPSI-----M 232 Query: 276 XXXXXXXXXXXXXXXXXNFEQAYLF-GNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDL 334 FE L GN + S+++ TY +++G+++ RFSYA A L Sbjct: 233 PIIVVFSILAIGNFLNAGFEDILLLAGNPVLRDVSDVLDTYVYRIGIQNSRFSYATAAGL 292 Query: 335 IQSVISVILIFSSNFIAKRMSGSSLF 360 +++ISV+L+ +N+ A+R SG+SL+ Sbjct: 293 FKAIISVLLLAGANYWARR-SGNSLW 317 >B3K492.1 B3K492_9BACI Binding-protein-dependent transport systems inner membrane component Length = 331 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 208/327 (63%), Gaps = 10/327 (3%) Query: 34 GSHMQLDTQLTSPQADSGRLWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYS 93 G M+ Q + D R ++ Q+ L + LG+V+++IF+Y PM+G+++AFK+++ Sbjct: 15 GPSMEPSVQ-DKRKLDRKRWLRKLYGQRHLQIMALLGVVWMIIFNYIPMYGVIIAFKEFN 73 Query: 94 ISSGIKGIFTSDWVGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEV 153 I +K I + WVGL +F EF D F ++RNTL +S LK+ FP PI+ A+ LNE+ Sbjct: 74 I---VKSIGEAPWVGLAHFKEFFSDEDFTNVMRNTLGISLLKLFIGFPLPIIFALFLNEI 130 Query: 154 KNMAFKRFVQTVSYLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPN 213 +++ +KR +QT+SYLPHF+SWV++ G+ +L AD+G++N L++L I EP+ L P Sbjct: 131 RSVRYKRTIQTISYLPHFLSWVILGGILMTWL-ADIGIINNILLALHIIDEPITYLAEPK 189 Query: 214 YFWGLAVGSAIWKEMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXX 273 YFWG+ + S IWKE+GW II+LAAI I+P +YEA+ IDGAGR ++ +ITLP +K Sbjct: 190 YFWGIIITSDIWKELGWSAIIYLAAIASISPEMYEASTIDGAGRFQKMWYITLPSIK--- 246 Query: 274 XXXXXXXXXXXXXXXXXXXNFEQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAID 333 NF+Q + NS+N S ++ + + G+++GR+SYA A+ Sbjct: 247 --STISILFILAVGGVLNSNFDQILVLRNSLNESASNVIDIFVYHTGMQNGRYSYAQAVA 304 Query: 334 LIQSVISVILIFSSNFIAKRMSGSSLF 360 L +SVI++IL+ +N + K+++ +SLF Sbjct: 305 LFKSVIAIILLLIANRVTKKLNDTSLF 331 >B5YAV4.1 B5YAV4_DICT6 Transmembrane lipoprotein Length = 304 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 140/305 (45%), Positives = 195/305 (63%), Gaps = 9/305 (2%) Query: 55 KRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGIFTSDWVGLKYFDE 114 K ++QK L L + +V+L+IF Y P++G + AF++Y GI IF WVGLKYF E Sbjct: 8 KIIRRQKYLILMIFPFVVWLIIFRYIPLWGWITAFQNYK--PGIP-IFQQQWVGLKYFKE 64 Query: 115 FVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRFVQTVSYLPHFISW 174 D +F ++RNTL +S L +IF FP PI+LAI++NE+++ FKR VQT+SYLPHF+SW Sbjct: 65 MFSDPEFYLVMRNTLAMSLLGLIFGFPLPIILAILINEIRHNTFKRTVQTISYLPHFVSW 124 Query: 175 VVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVGSAIWKEMGWWTII 234 V+V + +A L+ D GVVN AL+ LG I +P+ P YFW + V S IWKE+GW TII Sbjct: 125 VIVASIVHAMLAPD-GVVNYALLKLGLIKQPILFFGEPKYFWWIVVFSDIWKELGWNTII 183 Query: 235 FLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXXXXXXXXXXXXXNF 294 FLAA+T INP LYEAAE+DGA R +I HITLPG+ F Sbjct: 184 FLAAMTAINPELYEAAEVDGASRFRKIWHITLPGI-----MPTVIMILILSIGNIINIGF 238 Query: 295 EQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVISVILIFSSNFIAKRM 354 E+ +L S S+++ YA G+R GRFS+ A + +SVIS+IL+FS+N ++K++ Sbjct: 239 ERQFLLRTSAVRNVSDVIDLYALDYGIRAGRFSFGTAAGIFKSVISLILLFSANKVSKKV 298 Query: 355 SGSSL 359 +G + Sbjct: 299 TGHKI 303 >B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 200/319 (62%), Gaps = 10/319 (3%) Query: 42 QLTSPQADSGRLWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGI 101 Q P+ L RF KQ + L V + + +FSY PM+GILMAF+D++I KG+ Sbjct: 8 QEPVPKRKKESLLLRFAKQWDIQLMVLPALALVFVFSYIPMYGILMAFQDFNI---FKGM 64 Query: 102 FTSDWVGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRF 161 S W G K+F+ F +F ++RNT+++S LK + FPAPILLA+MLNEV++M FKR Sbjct: 65 GDSPWAGFKHFEMFFESPEFMTVMRNTIVISLLKFLIGFPAPILLALMLNEVRHMFFKRL 124 Query: 162 VQTVSYLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVG 221 VQTVSYLPHF+SWV+V G + + LS D G VN L L I EP+N L+ P YFWG+ V Sbjct: 125 VQTVSYLPHFLSWVIVSGFAISLLSTDNGSVNILLQKLNLIEEPINFLSLPEYFWGILVT 184 Query: 222 SAIWKEMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXX 281 + +WKE+G+ +I++LAA+ G++P +YEAA++DGA + +I ITLP + Sbjct: 185 TGVWKEIGFSSIVYLAAVAGVDPHMYEAADMDGASKFRQIFTITLPSI-----MPVVVIF 239 Query: 282 XXXXXXXXXXXNFEQAYLFG-NSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVIS 340 FE L N + S+++ TY +++G+ + RFSYA A+ L ++VIS Sbjct: 240 MILAIGNLLTAGFEDILLLAKNPVLREVSDVIDTYVYRIGIENSRFSYATAVGLFKAVIS 299 Query: 341 VILIFSSNFIAKRMSGSSL 359 V+L+ +N IA++ SG+SL Sbjct: 300 VMLLTIANLIARK-SGNSL 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,944,588,000 Number of extensions: 76154534 Number of successful extensions: 261340 Number of sequences better than 1.0e-05: 3642 Number of HSP's gapped: 258798 Number of HSP's successfully gapped: 3643 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)