BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0008.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I9B3.1 B8I9B3_CLOCE Glycoside hydrolase family 43 470 e-131 P48790.1 XYLA_CLOSR Xylosidase/arabinosidase Beta-xylosidase Alp... 467 e-130 A9KI84.1 A9KI84_CLOPH Alpha-N-arabinofuranosidase EC=3.2.1.55 458 e-127 A5ZTV3.1 A5ZTV3_9FIRM Putative uncharacterized protein 212 5e-53 A6NTH5.1 A6NTH5_9BACE Putative uncharacterized protein 209 3e-52 >B8I9B3.1 B8I9B3_CLOCE Glycoside hydrolase family 43 Length = 471 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/327 (71%), Positives = 262/327 (80%), Gaps = 4/327 (1%) Query: 1 LTEGDTTYLYXXXXCGYGDKSRHGAMATVLGPDMLTIIEESVFVAPSQPYSKXXXXXXXX 60 LTEGD TYLY C GDKSR GAMATVLGPDMLTI+EE VF+APSQPYSK Sbjct: 148 LTEGDRTYLYTGF-CAVGDKSRKGAMATVLGPDMLTIVEEPVFIAPSQPYSKGSGYEGHE 206 Query: 61 XXXAPSIRKRGDIYYLIYSSISMHELCYATSKHPTRGFTYQGVIVSNCDLHIDTYKPADQ 120 APSIRK GD YY IYSS+ HELCYATSKHPT+GF Y+GVIVSN DLHIDTYKPA + Sbjct: 207 FFEAPSIRKNGDTYYFIYSSVVFHELCYATSKHPTKGFEYKGVIVSNSDLHIDTYKPAQK 266 Query: 121 PMYYGGNNHGSIVEVNGEWYIFYHRHTNGTAFSRQGCIEPITFREDGTIPQVEITTSGPN 180 PM+YG NNHGSIVE+NG+WYIFYHRHTNGT FSRQ C E I EDGTIPQVE+T+ G N Sbjct: 267 PMFYGANNHGSIVEINGKWYIFYHRHTNGTNFSRQACCEQIEILEDGTIPQVEMTSCGCN 326 Query: 181 GGPLAGRGEYPAYLACHLFTKDQEMYTGGFGPMGAWMDSRFPKITQDGRDGDDEIGYIAN 240 GGPL GRGEY AYLAC+LF +++ +YT +WM+++FPKITQDGRDGD+EIGYIAN Sbjct: 327 GGPLEGRGEYAAYLACNLFCEEESLYTDW---TASWMNNQFPKITQDGRDGDEEIGYIAN 383 Query: 241 MTDSATAGFKYFDCQGVTRVSIKVRGYCHGEFQVKTAWDGPVLASIPVGFTNVWTEYTTD 300 M SATAGFKYFDC+G+ +V IKVRGYC G+F+VKTAWDGP L I VGFTNVW EY+ D Sbjct: 384 MKASATAGFKYFDCKGIKKVKIKVRGYCQGDFEVKTAWDGPALGKISVGFTNVWKEYSAD 443 Query: 301 VAIPDGVQSLYFTYTGGGGAQLGSFTL 327 + IPDGVQ+LYFTYTG G A L SFTL Sbjct: 444 IVIPDGVQALYFTYTGQGSASLASFTL 470 >P48790.1 XYLA_CLOSR Xylosidase/arabinosidase Beta-xylosidase Alpha-N-arabinofuranosidase EC=3.2.1.37 EC=3.2.1.55 Length = 473 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 261/328 (79%), Gaps = 4/328 (1%) Query: 1 LTEGDTTYLYXXXXCGYGDKSRHGAMATVLGPDMLTIIEESVFVAPSQPYSKXXXXXXXX 60 LTEG+ TYLY C GDKSR GAMATVLGPDMLT++EE V + PS+PYS+ Sbjct: 148 LTEGERTYLYTGF-CPKGDKSRKGAMATVLGPDMLTVVEEPVIIVPSEPYSRGSGFEGHE 206 Query: 61 XXXAPSIRKRGDIYYLIYSSISMHELCYATSKHPTRGFTYQGVIVSNCDLHIDTYKPADQ 120 APSIRK+GD YY IYSS+ MHELCYATSKHPT+GF Y GVIVSNCDLHID+YKPA++ Sbjct: 207 FFEAPSIRKKGDTYYFIYSSVVMHELCYATSKHPTKGFKYGGVIVSNCDLHIDSYKPAEK 266 Query: 121 PMYYGGNNHGSIVEVNGEWYIFYHRHTNGTAFSRQGCIEPITFREDGTIPQVEITTSGPN 180 PMYYGGNNHGSIVE+NGEWYIFYHRHTNGT+FSRQGC+E I EDG+IPQVE+T+ G Sbjct: 267 PMYYGGNNHGSIVEINGEWYIFYHRHTNGTSFSRQGCMEKIKILEDGSIPQVEMTSCGSA 326 Query: 181 GGPLAGRGEYPAYLACHLFTKDQEMYTGGFGPMGAWMDSRFPKITQDGRDGDDEIGYIAN 240 PL GRGEYPAY+AC+LF ++ +YT GAWM+++FPKITQDG+DGD+E GYIAN Sbjct: 327 DEPLPGRGEYPAYIACNLFCGEESVYT---DLTGAWMNNQFPKITQDGKDGDEEPGYIAN 383 Query: 241 MTDSATAGFKYFDCQGVTRVSIKVRGYCHGEFQVKTAWDGPVLASIPVGFTNVWTEYTTD 300 M DSATAGFKYFDC+G+ V IKVRGYC G F+VKT+W+G VL IPV F+N+WTE++ Sbjct: 384 MKDSATAGFKYFDCKGIKSVKIKVRGYCRGVFEVKTSWNGEVLGKIPVEFSNIWTEFSAS 443 Query: 301 VAIPDGVQSLYFTYTGGGGAQLGSFTLA 328 + IPDG+ +LYFTY G G A L SFTL Sbjct: 444 IPIPDGIHALYFTYRGSGSASLKSFTLC 471 >A9KI84.1 A9KI84_CLOPH Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 471 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/327 (67%), Positives = 257/327 (78%), Gaps = 4/327 (1%) Query: 1 LTEGDTTYLYXXXXCGYGDKSRHGAMATVLGPDMLTIIEESVFVAPSQPYSKXXXXXXXX 60 L EGD YLY C GDKSR GAMATVL DMLTIIE+ V +APS+PYSK Sbjct: 148 LVEGDKVYLYTGF-CAIGDKSRSGAMATVLSTDMLTIIEDPVIIAPSEPYSKGSGFEGHG 206 Query: 61 XXXAPSIRKRGDIYYLIYSSISMHELCYATSKHPTRGFTYQGVIVSNCDLHIDTYKPADQ 120 APSIRKRG+ YY IYSSI MHELCYATSKHPT GF Y+G IVSNCD+ I TYKPA++ Sbjct: 207 FFEAPSIRKRGNTYYFIYSSILMHELCYATSKHPTMGFKYRGTIVSNCDIGISTYKPANK 266 Query: 121 PMYYGGNNHGSIVEVNGEWYIFYHRHTNGTAFSRQGCIEPITFREDGTIPQVEITTSGPN 180 PMYYGGNNHGSI+E+NG+WYIFYHRHTNGT FSRQGC+E I+F ED +IPQVEIT+ GPN Sbjct: 267 PMYYGGNNHGSIMEINGKWYIFYHRHTNGTNFSRQGCLEEISFLEDESIPQVEITSCGPN 326 Query: 181 GGPLAGRGEYPAYLACHLFTKDQEMYTGGFGPMGAWMDSRFPKITQDGRDGDDEIGYIAN 240 GGPL G GEY AY+A +LF ++ +YT GAWM+++FPKITQDG+DGD+EIGYIAN Sbjct: 327 GGPLKGLGEYHAYIASNLFCDEESIYTDF---TGAWMNNQFPKITQDGKDGDEEIGYIAN 383 Query: 241 MTDSATAGFKYFDCQGVTRVSIKVRGYCHGEFQVKTAWDGPVLASIPVGFTNVWTEYTTD 300 M SATAGFKYF+C GV R+ IKVRGYC G+F++KT+ +GPVL IPV F+NVW EY+ D Sbjct: 384 MKASATAGFKYFNCIGVKRLKIKVRGYCKGDFEIKTSLNGPVLGKIPVAFSNVWKEYSAD 443 Query: 301 VAIPDGVQSLYFTYTGGGGAQLGSFTL 327 + IPDGV +LY TYTG G A L SFTL Sbjct: 444 ITIPDGVHALYITYTGEGSASLASFTL 470 >A5ZTV3.1 A5ZTV3_9FIRM Putative uncharacterized protein Length = 483 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 173/312 (55%), Gaps = 12/312 (3%) Query: 21 SRHGAMATVLGP-DMLTIIEESVFVAPS-QPYSKXXXXXXXXXXXAPSIRKRGDIYYLIY 78 + HG M L P DMLT++ ++ + + S A S+RK YY IY Sbjct: 178 TEHGPMCFELDPSDMLTVLNGPSYIGVAGEKESIGTPYEGHSFLEASSMRKFNGTYYFIY 237 Query: 79 SSISMHELCYATSKHPTRGFTYQGVIVSNCDLHIDTYKPADQPMYYGGNNHGSIVEVNGE 138 S+++ HELCYATS P +GF Y G++VSN D+ + GN HGSI+E+NG+ Sbjct: 238 STMNSHELCYATSDSPVKGFQYGGILVSNGDVGFEGVPDVKHARCNTGNTHGSIIELNGK 297 Query: 139 WYIFYHRHTNGTAFSRQGCIEPITFREDGTIPQVEITTSGPNGGPLAGRGEYPAYLACHL 198 +++FYHRH+N SRQ E I F EDG Q E+T+ G NGGPL G+G YP+Y+AC+L Sbjct: 298 YFVFYHRHSNRKQSSRQAMAEEIRF-EDGKFYQAEMTSCGLNGGPLEGKGSYPSYIACNL 356 Query: 199 FTKDQEMYTGGFGPMGAWMDSRFPKITQDGRD---GDDEIGYIANMTDSATAGFKYFDCQ 255 + K F M P +TQDG+D G D+ YIANM D A AGFKYFD Sbjct: 357 YGKKGTR----FLSMIKHPKKGCPYLTQDGKDRESGPDQ--YIANMCDGALAGFKYFDLS 410 Query: 256 GVTRVSIKVRGYCHGEFQVKTAWDGPVLASIPVGFTNVWTEYTTDVAIPDGVQSLYFTYT 315 +S+ ++G+ G V+T+ +G +A I + + E+++D+ + ++L+F + Sbjct: 411 ETKEISVTIKGHAEGTLYVRTSENGEAIAEISISPSKELREFSSDIHVSGNKEALFFVFE 470 Query: 316 GGGGAQLGSFTL 327 G G SFTL Sbjct: 471 GKGNFDFISFTL 482 >A6NTH5.1 A6NTH5_9BACE Putative uncharacterized protein Length = 485 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 171/323 (52%), Gaps = 23/323 (7%) Query: 16 GYGDKSRHGAMATVLGPDMLTIIEESVFVAPSQPYSKXXXXXXXXXXXAPSIRKRGDIYY 75 G+ + + G + L PDM+TI + P++ K A SIRK Y Sbjct: 170 GFHNLTNPGGVVLELEPDMVTIKSGPDLLFPTK--GKQGAFENHAFFEASSIRKVDGQYC 227 Query: 76 LIYSSISMHELCYATSKHPTRGFTYQGVIVSNCDLHIDTYKPADQPMYYGGNNHGSIVEV 135 IYSS HELCYA P F + G +V DL +D + + Y GN HG IVE+ Sbjct: 228 FIYSSQHNHELCYAMGPSPRGPFAFGGTLVDMGDLFLDGNTDESRAVNYLGNTHGGIVEI 287 Query: 136 NGEWYIFYHRHTNGTAFSRQGCIEPITFREDGTIPQVEITTSGPNGGPLAGRGEYPAYLA 195 G+WY+FYHR TN ++SRQ C E + R DG Q E+T+ G NGGPL G G+YPA +A Sbjct: 288 GGQWYVFYHRQTNRHSYSRQACAEKLERRPDGGFFQAEVTSCGLNGGPLRGVGQYPARIA 347 Query: 196 CHLFTKDQEMYTGGFGPMGAWMDSRFPKI--------TQDGRDGDD-EIGYIANMTDSAT 246 C+L++ G A D RFP++ TQ+G+DG++ + YIANM D AT Sbjct: 348 CNLWS----------GKGTARYDIRFPRLWLAAHPYFTQEGKDGEERDSQYIANMRDGAT 397 Query: 247 AGFKYFDCQGVTRVSIKVRGYCHGEFQVKTAWDGPV-LASIPVGFT-NVWTEYTTDVAIP 304 AGFKYF Q + VS++VRG G V D A I + + + W E + AIP Sbjct: 398 AGFKYFAVQSLKSVSVQVRGRADGALLVSDTPDCKAPAARIEIKLSGDGWKELSAPCAIP 457 Query: 305 DGVQSLYFTYTGGGGAQLGSFTL 327 DG++ LYF +TG G SFTL Sbjct: 458 DGIRPLYFKFTGKGRLDFRSFTL 480 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,175,823,473 Number of extensions: 96905625 Number of successful extensions: 146156 Number of sequences better than 1.0e-05: 118 Number of HSP's gapped: 146091 Number of HSP's successfully gapped: 118 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)