BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0004.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC03.1 B3KC03_9BACI Amidohydrolase 2 316 1e-84 B1DEQ3.1 B1DEQ3_9BACL Amidohydrolase 2 306 2e-81 B9K2K1.1 B9K2K1_AGRVS Putative uncharacterized protein 259 2e-67 B7QXI9.1 B7QXI9_9RHOB Hydrolase 244 5e-63 Q15XR2.1 Q15XR2_PSEA6 Amidohydrolase 2 227 9e-58 >B3KC03.1 B3KC03_9BACI Amidohydrolase 2 Length = 288 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 151/280 (53%), Positives = 198/280 (70%), Gaps = 2/280 (0%) Query: 12 MYIDAHQHYWKIDRDDYGWITPEIPVLFRDYLPSDLEPHLHRHGISRTIVVQAAPTVEET 71 M +DAHQHYW I+R DY WITPE+P L+R++LPSDL+PHL H + +I VQAAPT+EET Sbjct: 3 MRLDAHQHYWLIERGDYEWITPEVPELYRNFLPSDLKPHLDSHQLDGSITVQAAPTLEET 62 Query: 72 EYILGLSGQAESIAGVXXXXXXXXASPTFKEQLRQLRGHRKFTGLRVMIQEMEDPGLLLT 131 +Y+L L+ + SI GV P + R H KF G R+MIQ+M D ++L Sbjct: 63 DYLLSLADRDASIVGVVGWIDLF--DPEHRRHYEGFRKHPKFIGFRIMIQDMPDANVILE 120 Query: 132 RPYIEALSYLADEDLPVDLLVLADQLPQLIEMLERVPGLRGVIDHLAKPPIASGQLEPWR 191 +I+AL+ ED+P+DLLV + QL L++++E+VPG+RGVIDHL KPPI SGQ+EPW Sbjct: 121 PAFIQALNEYVKEDVPIDLLVRSHQLETLLKLIEQVPGIRGVIDHLGKPPIRSGQIEPWE 180 Query: 192 SRMAQIAKHPGIYCKLSGMVTEADPQGWTQEDFTAYVHAVLELFGPERVMFGSDWPVCLM 251 + M +IA+ P IYCKLSGMVTEA+ + W+QEDF YVH V+ +FGP+R+MFGSDWPVCL+ Sbjct: 181 NIMKRIARFPRIYCKLSGMVTEAEHRRWSQEDFNGYVHKVVAMFGPDRIMFGSDWPVCLL 240 Query: 252 AATYDEVVEVLRSALQGRLSAEEMEPVFGANAAGFYKLDK 291 +A YD+VV VL AL E +FG NA FYKL+K Sbjct: 241 SAGYDQVVNVLAEALPKHWGEREHARLFGLNAKAFYKLEK 280 >B1DEQ3.1 B1DEQ3_9BACL Amidohydrolase 2 Length = 284 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 151/281 (53%), Positives = 198/281 (70%), Gaps = 3/281 (1%) Query: 11 IMYIDAHQHYWKIDRDDYGWITPEIPVLFRDYLPSDLEPHLHRHGISRTIVVQAAPTVEE 70 ++ IDAHQHYW + R DY W+TP + VL++DYLP DLEP L HGI RTIVVQAA T EE Sbjct: 1 MLRIDAHQHYWVLSRGDYKWLTPALSVLYKDYLPVDLEPILREHGIDRTIVVQAAATEEE 60 Query: 71 TEYILGLSGQAESIAGVXXXXXXXXASPTFKEQLRQLRGHRKFTGLRVMIQEMEDPGLLL 130 T+++L L+ ++ESI GV F+ QL LR H KF G+R+M+Q+ EDPG +L Sbjct: 61 TQFLLQLAERSESIVGVVGWVDF--EGDGFERQLETLRTHPKFIGVRIMLQDEEDPGYVL 118 Query: 131 TRPYIEALSYLADEDLPVDLLVLADQLPQLIEMLERVPGLRGVIDHLAKPPIASGQLEPW 190 + L LAD D+PVDLLV + QL + +++R+P LRGVI+H+ KP IA +L PW Sbjct: 119 KPQIVSRLRLLADRDIPVDLLVKSHQLSSIATLVQRIPHLRGVINHIGKPNIADHELNPW 178 Query: 191 RSRMAQIAKHPGIYCKLSGMVTEADPQGWTQEDFTAYVHAVLELFGPERVMFGSDWPVCL 250 + +A+IA +P IYCKLSGMVTEADPQ WT DF Y+H VL+ FG R+MFGSDWPVCL Sbjct: 179 KQWVAEIADNPHIYCKLSGMVTEADPQLWTYTDFQDYIHYVLQTFGTHRLMFGSDWPVCL 238 Query: 251 MAATYDEVVEVLRSALQGRLSAEEMEPVFGANAAGFYKLDK 291 +AA+Y +V++V+ AL L+A E + +FG NA FYKL+K Sbjct: 239 LAASYSQVMDVVNHALP-HLTAAERDELFGGNAIRFYKLEK 278 >B9K2K1.1 B9K2K1_AGRVS Putative uncharacterized protein Length = 274 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/274 (44%), Positives = 176/274 (64%), Gaps = 3/274 (1%) Query: 14 IDAHQHYWKIDRDDYGWITPEIPVLFRDYLPSDLEPHLHRHGISRTIVVQAAPTVEETEY 73 +D+HQH+WK++R DYGW+TP++ ++R++LP DLEP + R GI+RTI+VQAA T ET++ Sbjct: 2 LDSHQHFWKVERGDYGWLTPDLGAIYRNFLPKDLEPDMRRAGITRTILVQAAETQAETDF 61 Query: 74 ILGLSGQAESIAGVXXXXXXXXASPTFKEQLRQLRGHRKFTGLRVMIQEMEDPGLLLTRP 133 +L L+ + + IAGV + F +L+ R + F G+R M+Q + D +L Sbjct: 62 LLALAAKTDFIAGVVGWLDLE--ADDFSTRLKHYRANPDFIGIRPMLQSLADDVYILRPK 119 Query: 134 YIEALSYLADEDLPVDLLVLADQLPQLIEMLERVPGLRGVIDHLAKPPIASGQLEPWRSR 193 I++L +AD LP D+L LP +I L +VP L+ V+DH++KP IA G L+PWR Sbjct: 120 VIDSLKAIADSGLPFDILTFPRHLPHVIAALRQVPDLKAVVDHISKPDIAKGTLDPWRDH 179 Query: 194 MAQIAKHPGIYCKLSGMVTEADPQGWTQEDFTAYVHAVLELFGPERVMFGSDWPVCLMAA 253 MA+IA +YCK+SGMVTEA W EDF YV V++ FGP R+MFGSDWPVC +AA Sbjct: 180 MAEIASFDQVYCKVSGMVTEASAD-WALEDFRPYVDHVIKCFGPNRLMFGSDWPVCTLAA 238 Query: 254 TYDEVVEVLRSALQGRLSAEEMEPVFGANAAGFY 287 +Y EV + R+ + +++ +F NA FY Sbjct: 239 SYGEVANLARTLVSAHFGPDDLTLIFETNARRFY 272 >B7QXI9.1 B7QXI9_9RHOB Hydrolase Length = 276 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 124/278 (44%), Positives = 172/278 (61%), Gaps = 4/278 (1%) Query: 12 MYIDAHQHYWKIDRDDYGWITPEIPVLFRDYLPSDLEPHLHRHGISRTIVVQAAPTVEET 71 M IDAHQH+W ++R DYGW+TPE+ ++RD+LP DL+P L R GI T++VQAAPTV ET Sbjct: 1 MKIDAHQHFWALERGDYGWLTPELKPIYRDFLPDDLQPSLRRAGIEGTVLVQAAPTVAET 60 Query: 72 EYILGLSGQAESIAGVXXXXXXXXASPTFKEQLRQLRGHRKFTGLRVMIQEMEDPGLLLT 131 EY+L L+ + I GV +P +++ +L G+ GLR MIQ+++DP +L Sbjct: 61 EYLLSLAAENSFIKGVVGWVDFD--APDAAQEIAKLAGNPALVGLRPMIQDIDDPNWMLD 118 Query: 132 RPYIEALSYLADEDLPVDLLVLADQLPQLIEMLERVPGLRGVIDHLAKPPIASGQLEPWR 191 A L DL + LVL L QL+E+L+R P +R VIDH AKP I W Sbjct: 119 ENLAPAYQALQHFDLAFEALVLPRHLGQLLELLKRYPNMRSVIDHGAKPEIRDSAFSDWA 178 Query: 192 SRMAQIAKHPGIYCKLSGMVTEADPQGWTQEDFTAYVHAVLELFGPERVMFGSDWPVCLM 251 + MA +A YCKLSG+VTEA Q WT E+ YV +L+ FGP+R+++GSDWPVC + Sbjct: 179 TGMAALANGTNAYCKLSGLVTEA-AQDWTTENLRPYVDHLLDTFGPQRLIWGSDWPVCTL 237 Query: 252 AATYDEVVEVLRSALQGRLSAEEMEPVFGANAAGFYKL 289 A++YD V+ + L + A+ + + G NAA FY L Sbjct: 238 ASSYDRWVDTTETLLATQTDADRVA-ILGGNAANFYNL 274 >Q15XR2.1 Q15XR2_PSEA6 Amidohydrolase 2 Length = 276 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 120/279 (43%), Positives = 169/279 (60%), Gaps = 4/279 (1%) Query: 12 MYIDAHQHYWKIDRDDYGWITPEIPVLFRDYLPSDLEPHLHRHGISRTIVVQAAPTVEET 71 M IDAHQH+W + +++ WI + VL RDY P LE +G+ T+VVQA ++EET Sbjct: 1 MRIDAHQHFWAYNPEEFDWIGEDEGVLKRDYFPPALEAEAGANGVDGTVVVQARQSIEET 60 Query: 72 EYILGLSGQAESIAGVXXXXXXXXASPTFKEQLRQLRGHRKFTGLRVMIQEMEDPGLLLT 131 +++L L+ Q I GV +P+ ++QL + + G R ++Q DP +L Sbjct: 61 QWLLSLAQQFPLIKGVVGWVDLM--NPSLEQQLLSWQNEQVLKGFRHVLQGEPDPNFMLQ 118 Query: 132 RPYIEALSYLADEDLPVDLLVLADQLPQLIEMLERVPGLRGVIDHLAKPPIASGQ-LEPW 190 ++E L L D DLL+ A QLPQ ++L+ +P R VIDH+AKP IASG+ W Sbjct: 119 PRFVEGLKLLHQFDYTYDLLIFAAQLPQARQLLDTLPQHRIVIDHIAKPDIASGEGFAQW 178 Query: 191 RSRMAQIAKHPGIYCKLSGMVTEADPQGWTQEDFTAYVHAVLELFGPERVMFGSDWPVCL 250 ++ M IA+H +YCK+SGMVTEA + W + DF Y+ V FGPERVMFGSDWPVC Sbjct: 179 KAHMQAIAEHQNVYCKISGMVTEASHKDWQEADFIPYMDVVFSAFGPERVMFGSDWPVCQ 238 Query: 251 MAATYDEVVEVLRSALQGRLSAEEMEPVFGANAAGFYKL 289 +AATY EV++++ + RL E + VFG NA FY+L Sbjct: 239 LAATYPEVIQIVERYV-TRLYPEFSQHVFGLNAERFYRL 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,781,217,284 Number of extensions: 74393726 Number of successful extensions: 157549 Number of sequences better than 1.0e-05: 348 Number of HSP's gapped: 157086 Number of HSP's successfully gapped: 348 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)