BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0103.p
         (95 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFP1.1 B3KFP1_9BACI Phosphocarrier, HPr family                      143   4e-33
B7GIF7.1 B7GIF7_ANOFW Phosphotransferase system, HPr-related pro...    82   1e-14
Q731P9.1 Q731P9_BACC1 Phosphocarrier protein HPr                       80   5e-14
B9IWR2.1 B9IWR2_BACCQ Phosphocarrier protein HPr                       80   5e-14
B7HN27.1 B7HN27_BACC7 Phosphocarrier protein HPr                       80   5e-14

>B3KFP1.1 B3KFP1_9BACI Phosphocarrier, HPr family
          Length = 91

 Score =  143 bits (361), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 75/91 (82%)

Query: 5  MQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDT 64
          MQ+TFRIIDEDGIHARPATALVNTA KF+ T SFAEA GKKVTLKSILGVLSLGLE GDT
Sbjct: 1  MQQTFRIIDEDGIHARPATALVNTANKFQDTNSFAEANGKKVTLKSILGVLSLGLEQGDT 60

Query: 65 LTLITEGXXXXXXXXXXQEVMVKEGLGELHE 95
          LTLITEG          QEVMV EGLGELHE
Sbjct: 61 LTLITEGGNESEALTALQEVMVNEGLGELHE 91


>B7GIF7.1 B7GIF7_ANOFW Phosphotransferase system, HPr-related protein
          Length = 90

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 5  MQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDT 64
          MQKTF++  E GIHARPAT LV TA+KF       E  GKKV LKSI+GV+SLG+  G  
Sbjct: 4  MQKTFKVTAESGIHARPATMLVQTASKFDSDIQL-EYNGKKVNLKSIMGVMSLGIPQGAQ 62

Query: 65 LTLITEGXXXXXXXXXXQEVMVKEGLGE 92
          +T+  EG           E + KEGL E
Sbjct: 63 ITISAEGSDAADAMNALTETLAKEGLAE 90


>Q731P9.1 Q731P9_BACC1 Phosphocarrier protein HPr
          Length = 87

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 5  MQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDT 64
          M+K F++  + GIHARPAT LVNTA+KF G++   E  GK V LKSI+GV+SLG++ G  
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSDINLEYNGKNVNLKSIMGVMSLGIQQGAE 59

Query: 65 LTLITEGXXXXXXXXXXQEVMVKEGLGE 92
          + +   G          +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


>B9IWR2.1 B9IWR2_BACCQ Phosphocarrier protein HPr
          Length = 87

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 5  MQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDT 64
          M+K F++  + GIHARPAT LVNTA+KF G++   E  GK V LKSI+GV+SLG++ G  
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSDINLEYNGKNVNLKSIMGVMSLGIQQGAE 59

Query: 65 LTLITEGXXXXXXXXXXQEVMVKEGLGE 92
          + +   G          +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


>B7HN27.1 B7HN27_BACC7 Phosphocarrier protein HPr
          Length = 87

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 5  MQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDT 64
          M+K F++  + GIHARPAT LVNTA+KF G++   E  GK V LKSI+GV+SLG++ G  
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSDINLEYNGKNVNLKSIMGVMSLGIQQGAE 59

Query: 65 LTLITEGXXXXXXXXXXQEVMVKEGLGE 92
          + +   G          +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 428,815,768
Number of extensions: 12564078
Number of successful extensions: 26211
Number of sequences better than 1.0e-05: 321
Number of HSP's gapped: 26845
Number of HSP's successfully gapped: 321
Length of query: 95
Length of database: 3,060,696,203
Length adjustment: 64
Effective length of query: 31
Effective length of database: 2,457,751,243
Effective search space: 76190288533
Effective search space used: 76190288533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)