BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0096.p
         (714 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB35.1 B3KB35_9BACI Putative uncharacterized protein                128   2e-27
B3KB36.1 B3KB36_9BACI Putative uncharacterized protein                 78   4e-12

>B3KB35.1 B3KB35_9BACI Putative uncharacterized protein
          Length = 520

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 72/83 (86%)

Query: 1  VEIYGTSYKLVGSSTEYMKQVARYVDEHMRAISKSHTRLDTPRIAVLAAVHMAEQAIQVQ 60
          V+IYGTSYKLVG+S++Y +QVA YVD+ MR ISK+H+RLDTPRIAVLAAVHMAE+A+Q  
Sbjct: 11 VDIYGTSYKLVGNSSDYTRQVANYVDDRMRTISKAHSRLDTPRIAVLAAVHMAEEALQKL 70

Query: 61 DFKNELNMLTGERTELRVEVARL 83
          +++NE  ++T ER ELR E+A++
Sbjct: 71 EYQNEAKLMTAERNELRTELAKV 93


>B3KB36.1 B3KB36_9BACI Putative uncharacterized protein
          Length = 121

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 59/92 (64%)

Query: 622 LREEIEIWEQXXXXXXXXXXXMNREHSQVQQQLDEIGESYELVQGQLRLLQAQSEMRQGE 681
           L EE++ W+Q           +  E S+  QQ  E+GE YELV  Q RLLQA+ E++  +
Sbjct: 28  LEEELQSWQQEIASARQVCDRLEGEKSEAAQQYSELGEQYELVMHQYRLLQAEQELKAEQ 87

Query: 682 LDKLSQEHQSLQAEYAKLQREYNEWIQLIEQD 713
             +L +EH+ L+ EYAKLQ EYNEWI+LIEQD
Sbjct: 88  AAQLEEEHRKLKEEYAKLQVEYNEWIELIEQD 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.124    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,243,918,808
Number of extensions: 61906213
Number of successful extensions: 393693
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 395235
Number of HSP's successfully gapped: 9
Length of query: 714
Length of database: 3,060,696,203
Length adjustment: 143
Effective length of query: 571
Effective length of database: 1,713,491,058
Effective search space: 978403394118
Effective search space used: 978403394118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 135 (56.6 bits)