BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0093.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7E2.1 B1D7E2_9BACL Putative uncharacterized protein                117   4e-25
B3KB38.1 B3KB38_9BACI Putative uncharacterized protein                115   1e-24
C0Z9F0.1 C0Z9F0_BREBN Conserved hypothetical membrane protein          84   3e-15
B7R958.1 B7R958_9THEO Putative uncharacterized protein                 82   2e-14
Q8RB78.1 Q8RB78_THETN Putative uncharacterized protein                 81   4e-14

>B1D7E2.1 B1D7E2_9BACL Putative uncharacterized protein
          Length = 122

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 72/109 (66%)

Query: 1   VVRFIVAAIVLMVVGWIVPQFTVGGFWSXXXXXXXXXXXGWVIEGIFGKKTTPFGRGIVG 60
           VVRFIVAAIVLMVVGWIVPQF+VGGFWS           GW++EGIFGKK TPFGRGIVG
Sbjct: 7   VVRFIVAAIVLMVVGWIVPQFSVGGFWSALLLALVIAALGWIVEGIFGKKVTPFGRGIVG 66

Query: 61  FLVSALVIWIAQFIXXXXXXXXXXXXXXXXXXXXXXXFLPVSTPFEAGK 109
           F+ SA VIWIAQFI                       F+PVSTP+EAG+
Sbjct: 67  FIASAAVIWIAQFIVGGVSVTWLGAILAALVIGIIDLFIPVSTPYEAGR 115


>B3KB38.1 B3KB38_9BACI Putative uncharacterized protein
          Length = 119

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 72/109 (66%)

Query: 1   VVRFIVAAIVLMVVGWIVPQFTVGGFWSXXXXXXXXXXXGWVIEGIFGKKTTPFGRGIVG 60
           VVRFIVAA+VLMVVGWIVPQF+VGGF S           GW IEGIFGKK TPFGRGIVG
Sbjct: 7   VVRFIVAALVLMVVGWIVPQFSVGGFGSALLLALVIALFGWAIEGIFGKKVTPFGRGIVG 66

Query: 61  FLVSALVIWIAQFIXXXXXXXXXXXXXXXXXXXXXXXFLPVSTPFEAGK 109
           F+VSALVI++AQFI                       F+P+STPFEAGK
Sbjct: 67  FIVSALVIYLAQFIVGGVSVSILGALLAALVIGIIDLFIPISTPFEAGK 115


>C0Z9F0.1 C0Z9F0_BREBN Conserved hypothetical membrane protein
          Length = 121

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%)

Query: 1   VVRFIVAAIVLMVVGWIVPQFTVGGFWSXXXXXXXXXXXGWVIEGIFGKKTTPFGRGIVG 60
           +VRFIVAA+VLM VG++VP F+V  FW+           GW +E IFG++ +P+ RGI+G
Sbjct: 4   IVRFIVAAVVLMFVGFLVPGFSVSSFWTALLAAVVIALIGWAVEAIFGERISPYNRGIIG 63

Query: 61  FLVSALVIWIAQFIXXXXXXXXXXXXXXXXXXXXXXXFLPVSTPFE 106
           FLVSA+VI++ QFI                       F+P+ T  +
Sbjct: 64  FLVSAVVIYLTQFIVSGFRVTILGALLASLVIGIIDLFIPIKTHMD 109


>B7R958.1 B7R958_9THEO Putative uncharacterized protein
          Length = 223

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 1   VVRFIVAAIVLMVVGWIVPQFTVGGFWSXXXXXXXXXXXGWVIEGIFGKKTTPFGRGIVG 60
           ++RFIV+AIVLMVVG++VP F+V GFW            G+++E I GK  +P  RGIVG
Sbjct: 120 IIRFIVSAIVLMVVGYLVPGFSVAGFWGALISAVVIAILGYIVELILGKNISPRSRGIVG 179

Query: 61  FLVSALVIWIAQFI 74
           F+V+A+VI+I+QFI
Sbjct: 180 FIVAAVVIYISQFI 193


>Q8RB78.1 Q8RB78_THETN Putative uncharacterized protein
          Length = 109

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 1  VVRFIVAAIVLMVVGWIVPQFTVGGFWSXXXXXXXXXXXGWVIEGIFGKKTTPFGRGIVG 60
          ++RFIV+AIVLMVVG++VP F+V GFW            G+++E I GK  +P  RGIVG
Sbjct: 6  IIRFIVSAIVLMVVGYLVPGFSVAGFWGALISAVVIAILGYIVELILGKNISPRSRGIVG 65

Query: 61 FLVSALVIWIAQFI 74
          F+V+A+VI+I+QFI
Sbjct: 66 FIVAAVVIYISQFI 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.149    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 459,580,654
Number of extensions: 11642327
Number of successful extensions: 30307
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 30284
Number of HSP's successfully gapped: 58
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)