BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0092.p (788 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB39.1 B3KB39_9BACI MutS2 family protein 1117 0.0 B1D7E1.1 B1D7E1_9BACL MutS2 family protein 973 0.0 A9U6K9.1 A9U6K9_PHYPA Predicted protein (Fragment) 787 0.0 C5D5Q8.1 C5D5Q8_9BACI MutS2 family protein 729 0.0 C0Z9F1.1 MUTS2_BREBN MutS2 protein 727 0.0 >B3KB39.1 B3KB39_9BACI MutS2 family protein Length = 789 Score = 1117 bits (2888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/789 (71%), Positives = 626/789 (79%), Gaps = 1/789 (0%) Query: 1 LDDKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLK 60 ++DKILHTLEYRKILN LTQYTQT MG L AE L P D E VK LL ATD+A VDRLK Sbjct: 1 MNDKILHTLEYRKILNTLTQYTQTSMGSLRAERLMPETDLEAVKDLLAATDQAYTVDRLK 60 Query: 61 GIPSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDENIPLLFA 120 G PSF G+TDI ALKRA IGG L ELL+ NTI G+RR+KRF+AA+HEDE I +LF Sbjct: 61 GNPSFRGITDINDALKRARIGGTLNPHELLATSNTIHGSRRIKRFIAAIHEDEKIDILFN 120 Query: 121 QSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSV 180 SDL+SEQK +EDAIR CIDE A+VLD+AS EL+ IRRELRGGE RIREKL+SMIRS SV Sbjct: 121 LSDLISEQKPLEDAIRLCIDETAEVLDSASAELSQIRRELRGGEVRIREKLESMIRSQSV 180 Query: 181 AKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXX 240 AKMLQDQL+TIRGDRFVIPVKAEYR+HFGGIVHDQSGSGATLFIEPESIVAMNNK Sbjct: 181 AKMLQDQLITIRGDRFVIPVKAEYRSHFGGIVHDQSGSGATLFIEPESIVAMNNKLRETR 240 Query: 241 XXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGY 300 A VG+ AE ++ DVD++G+LDFIFAKARLA MKA+ PRMNDRGY Sbjct: 241 MREEREIEVILQKLTAQVGEQAELLSIDVDLIGQLDFIFAKARLAHVMKASLPRMNDRGY 300 Query: 301 LKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFI 360 +KLR+GRHPLIP +QVVPLDVELGN Y+SIIVTGPNTGGKTVTLKTI FI Sbjct: 301 IKLRRGRHPLIPTDQVVPLDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLNLMAMSGLFI 360 Query: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGT 420 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTF SHMTNII IL +MTPKSL+LLDEVGAGT Sbjct: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFSSHMTNIIRILSQMTPKSLVLLDEVGAGT 420 Query: 421 DPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRL 480 DPAEGSALAI+ILE+IHR CRM+ATTHYSELKAYAYERKGVINASMEFD+ TLSPTYRL Sbjct: 421 DPAEGSALAISILEHIHRMGCRMIATTHYSELKAYAYERKGVINASMEFDINTLSPTYRL 480 Query: 481 LVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXX 540 LVGVPGRSNAFAIAERLGLP ILE ARGEVKEED RVEHMIASL Sbjct: 481 LVGVPGRSNAFAIAERLGLPGSILEFARGEVKEEDQRVEHMIASLEENRHTAEVEREKAE 540 Query: 541 XXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEE 600 Q EL+KLE Q+DK ++KA +A I+DKAR EAE+II+DLR++A EE Sbjct: 541 QVRKEMEELRQRHQQELQKLEEQKDKLVDKARAEARQIVDKARSEAEEIIADLRKIAQEE 600 Query: 601 GASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPRKIQPGDEVKVQNVNQKGYVVELS 660 GASVKEHKLI AR+RLD+AEP KKT + S K R I+PGDEV+V ++NQKG+VVE+S Sbjct: 601 GASVKEHKLIAARKRLDDAEPQQGKKTGGQRSAKQQRSIEPGDEVRVYSLNQKGHVVEMS 660 Query: 661 GPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTV-KRTRDENIRSELDLRGTN 719 G KEA+VQ GIMKMKV L+DLE TV KRTRD NIR+ELDLRG N Sbjct: 661 GSKEAVVQLGIMKMKVALDDLELLSNPAANAKQAPKQHATVLKRTRDANIRNELDLRGAN 720 Query: 720 LEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGG 779 LEEA++E DRFIDEAFLGNLGQI IIHGKGTG+LRTGIQ+YLRKHKHVKS+RLGNY EGG Sbjct: 721 LEEALIEVDRFIDEAFLGNLGQIYIIHGKGTGILRTGIQDYLRKHKHVKSHRLGNYGEGG 780 Query: 780 AGVTVAELQ 788 GVT+AEL+ Sbjct: 781 NGVTIAELK 789 >B1D7E1.1 B1D7E1_9BACL MutS2 family protein Length = 789 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/790 (61%), Positives = 589/790 (74%), Gaps = 3/790 (0%) Query: 1 LDDKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLK 60 +D KIL TLE+ KI NKL + T +G+ + L P D E VK +LQ TDEA DRLK Sbjct: 1 MDSKILSTLEFHKITNKLVHHAATSLGKSVSGQLAPVSDLEDVKHMLQTTDEAYKADRLK 60 Query: 61 GIPSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDENIPLLFA 120 G FGGV DI +L RA IGG L +ELL + T GARRVK+ + +HED+ IPLLF Sbjct: 61 GNAPFGGVVDISASLHRARIGGTLNPAELLDIAATARGARRVKKHIDNLHEDDPIPLLFQ 120 Query: 121 QSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSV 180 ++ LSE K +EDAI CID+ A+V+D+ASPELA+IRRELR GE+RIREKL+ MIRSSSV Sbjct: 121 MTEQLSEHKPLEDAIFDCIDDQAEVMDSASPELASIRRELRSGESRIREKLEQMIRSSSV 180 Query: 181 AKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXX 240 KMLQD ++T+R DR+VIPVK EYR+HFGGIVHDQSGSGATLFIEPE+IV+MNNK Sbjct: 181 QKMLQDSIITLRNDRYVIPVKQEYRSHFGGIVHDQSGSGATLFIEPEAIVSMNNKLRETK 240 Query: 241 XXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGY 300 A + E++ Y+ D+LG+LDF +AKARLA +MKAT PRMNDRG+ Sbjct: 241 AAELREIEKILQKLTARAAEHVEDLLYNQDLLGKLDFAYAKARLAHEMKATLPRMNDRGF 300 Query: 301 LKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFI 360 LK+++GRHPLI ++VVPLDVELGNQ+++IIVTGPNTGGKTV+LKT+ F+ Sbjct: 301 LKIKRGRHPLIAPDKVVPLDVELGNQFTAIIVTGPNTGGKTVSLKTVGLLSLMAMSGLFV 360 Query: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGT 420 PA+EGSQ+CVFD+IYADIGDEQSIEQSLSTF SHMTNII IL MT KSL+LLDE+GAGT Sbjct: 361 PADEGSQLCVFDSIYADIGDEQSIEQSLSTFSSHMTNIIRILGSMTSKSLVLLDELGAGT 420 Query: 421 DPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRL 480 DPAEGSALAIAILE+IH+ + R++ATTHYSELKAYAY RKGVINASMEFDV TLSPTYRL Sbjct: 421 DPAEGSALAIAILEHIHKLDSRIIATTHYSELKAYAYNRKGVINASMEFDVATLSPTYRL 480 Query: 481 LVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXX 540 LVGVPGRSNAFAIAERLGL I++HARGEV EED RVE+MIASL Sbjct: 481 LVGVPGRSNAFAIAERLGLSQAIIDHARGEVSEEDQRVENMIASLEEDRLSAESERNTAE 540 Query: 541 XXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEE 600 + ELE+ E QRDK L+KA+++A + KAR+EA+QII+DLR+LALEE Sbjct: 541 SMRREMEAQRKRHEAELERFEEQRDKMLQKAQEEAHEAVAKARREADQIIADLRKLALEE 600 Query: 601 GASVKEHKLIEARRRLDEAEP--APRKKTAARSSVKAPRKIQPGDEVKVQNVNQKGYVVE 658 GASVKEHKLIEA+RRL+EA P A +KK +A K P KI GDEV V ++NQKG V E Sbjct: 601 GASVKEHKLIEAKRRLEEAAPELATKKKRSAGGGAKKPAKIGAGDEVMVYSLNQKGIVAE 660 Query: 659 LSGPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGT 718 + G +A VQ GIMKMKV L+DLE ++KR++++++R ELDLRG Sbjct: 661 I-GASDATVQLGIMKMKVALDDLELIKPVAQLNKQQPKQTASLKRSKEDSLRMELDLRGA 719 Query: 719 NLEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEG 778 NLEEAI+E DRF+DE++LG LGQ+ IIHG GTGVLR GIQ+YLRKH VK+YRLG Y EG Sbjct: 720 NLEEAIIEVDRFLDESYLGGLGQVYIIHGMGTGVLRAGIQQYLRKHSLVKTYRLGKYGEG 779 Query: 779 GAGVTVAELQ 788 GAGVTVAEL+ Sbjct: 780 GAGVTVAELK 789 >A9U6K9.1 A9U6K9_PHYPA Predicted protein (Fragment) Length = 866 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/572 (72%), Positives = 461/572 (80%) Query: 104 RFLAAMHEDENIPLLFAQSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGG 163 RF+A +HEDE IPLL S+ LSEQK +EDAI+ACIDE+A+VLD+ASP LA +RRELR G Sbjct: 295 RFIANVHEDEPIPLLEGISENLSEQKALEDAIKACIDESAEVLDSASPGLAQVRRELRSG 354 Query: 164 ETRIREKLDSMIRSSSVAKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLF 223 E RIREKLDSMIRSSSVAKMLQDQL+TIRGDRFVIPVKAEYR++FGGIVHDQSGSGATLF Sbjct: 355 EVRIREKLDSMIRSSSVAKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLF 414 Query: 224 IEPESIVAMNNKXXXXXXXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKAR 283 IEPESIVAMNNK ALVG+ A+ + D+D+LG+LDFIFAK R Sbjct: 415 IEPESIVAMNNKLRETRMKEEREIEIILQKLTALVGEQADLLLLDIDLLGQLDFIFAKGR 474 Query: 284 LARDMKATQPRMNDRGYLKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVT 343 LA MKA+QPRMNDRGYLKL+KGRHPLI E+VVP+DVELGN YSSIIVTGPNTGGKTVT Sbjct: 475 LAHVMKASQPRMNDRGYLKLKKGRHPLIDMEKVVPIDVELGNSYSSIIVTGPNTGGKTVT 534 Query: 344 LKTIXXXXXXXXXXXFIPAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILR 403 LKTI F+PAEEGSQ+CVFDAIYADIGDEQSIEQSLSTF SHMTNII IL Sbjct: 535 LKTIGLLSLMAMSGLFVPAEEGSQLCVFDAIYADIGDEQSIEQSLSTFSSHMTNIIRILN 594 Query: 404 RMTPKSLILLDEVGAGTDPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVI 463 MTPKSL+LLDEVGAGTDPAEGSALAI+ILE+IH CRMVATTHYSELKAYAYERKGVI Sbjct: 595 HMTPKSLVLLDEVGAGTDPAEGSALAISILEHIHSLGCRMVATTHYSELKAYAYERKGVI 654 Query: 464 NASMEFDVQTLSPTYRLLVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIA 523 NASMEFDV TLSPTYRLLVGVPGRSNAFAIAERLGLP IL++ARGEVKEED RVEHMIA Sbjct: 655 NASMEFDVNTLSPTYRLLVGVPGRSNAFAIAERLGLPQVILDYARGEVKEEDQRVEHMIA 714 Query: 524 SLXXXXXXXXXXXXXXXXXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKAR 583 SL Q ELEKLE QRD+ +EKA +A ++ KAR Sbjct: 715 SLEENRLGAESEREKAEKLRQEMEQLRSRHQQELEKLEEQRDRLIEKARGEAKEVIAKAR 774 Query: 584 KEAEQIISDLRRLALEEGASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPRKIQPGD 643 +EAEQII+DLR+LA EEGASVKEHKLI ARR+LDEAEP RKK AA+ KAPR+I+PGD Sbjct: 775 REAEQIIADLRQLAKEEGASVKEHKLIAARRQLDEAEPQQRKKGAAKPKAKAPRQIEPGD 834 Query: 644 EVKVQNVNQKGYVVELSGPKEAIVQFGIMKMK 675 EV V ++NQKG+VVELSG KEA+VQ GIMKMK Sbjct: 835 EVMVYSLNQKGHVVELSGAKEAVVQLGIMKMK 866 >C5D5Q8.1 C5D5Q8_9BACI MutS2 family protein Length = 784 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/786 (47%), Positives = 519/786 (66%), Gaps = 6/786 (0%) Query: 4 KILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLKGIP 63 ++LH LE+ K+ +L ++ + +G+ + E L PS F V + TDEA RL+G Sbjct: 4 RVLHVLEFDKVKEQLLEHVSSSLGKEKVEKLFPSSHFAEVTNWQEETDEAVAALRLRGHV 63 Query: 64 SFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHED-ENIPLLFAQS 122 GG+ DI+ +LKRA IGG L ELL + +TI +R++K+F+ ++HE+ E P L + Sbjct: 64 PLGGIFDIRASLKRAKIGGTLSPHELLDIASTISASRQLKQFIESLHEEKEEFPHLAGYA 123 Query: 123 DLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSVAK 182 + L+ V+ AI CID++ +V+D AS L +IR++LR E R+REKL+++IRS S K Sbjct: 124 EKLAALPEVQQAIERCIDDHGEVMDHASERLRSIRQQLRTTEARVREKLENIIRSQSAQK 183 Query: 183 MLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXXXX 242 ML D ++TIR DR+VIPVK EYR +GGIVHDQS SGATLFIEP+++V +NN+ Sbjct: 184 MLSDAIITIRNDRYVIPVKQEYRGVYGGIVHDQSASGATLFIEPQAVVELNNQLQEARVK 243 Query: 243 XXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGYLK 302 ++V + AE + +VDIL +LDFIFAKA+ A +KAT+P MNDRGY++ Sbjct: 244 EKREIERILTELTSIVAEHAEALLENVDILAQLDFIFAKAKYANKLKATKPVMNDRGYIR 303 Query: 303 LRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFIPA 362 L + RHPLI + VVP D+ELG Y++I++TGPNTGGKTVTLKTI FIPA Sbjct: 304 LLQARHPLIDQDVVVPNDIELGKDYTTIVITGPNTGGKTVTLKTIGLLTLMAQAGLFIPA 363 Query: 363 EEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGTDP 422 +GS++ VF ++YADIGDEQSIEQSLSTF SHM NI+ ILR + +SL+L DE+GAGTDP Sbjct: 364 LDGSELAVFRSVYADIGDEQSIEQSLSTFSSHMVNIVDILRNVDHESLVLFDELGAGTDP 423 Query: 423 AEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRLLV 482 EG+ALAIAIL+ +H R VATTHY ELKAY Y R GVINAS+EFD +TL PTY+LL+ Sbjct: 424 QEGAALAIAILDEVHGRGARTVATTHYPELKAYGYNRDGVINASVEFDTETLRPTYKLLI 483 Query: 483 GVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXXXX 542 G+PGRSNAF I++RLGL I+E A+ + E +VE+MIASL Sbjct: 484 GIPGRSNAFEISKRLGLDERIIERAKSHISAESNKVENMIASLEQSKKRAEEEEKKAKEA 543 Query: 543 XXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEEGA 602 + + E+L +RD+ +E+A++ A+ I+ +++EAE+II +LRR+ E+ A Sbjct: 544 RMEAEKLRSDWEQKWEELHEKRDEIIEEAKRKAADIVRASQQEAERIIRELRRMQKEKQA 603 Query: 603 SVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPRKIQPGDEVKVQNVNQKGYVVELSGP 662 +KEH+LIEA++RL+EA P +K + QPGDEVKV ++NQKGY+VE Sbjct: 604 EIKEHELIEAKKRLEEAIPT-LEKKKKERKKQTQHAFQPGDEVKVTSLNQKGYLVEKVSD 662 Query: 663 KEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGTNLEE 722 E VQ GI+KMK+N DLE+ TVK +D ++ ELDLRG E+ Sbjct: 663 DEWQVQLGILKMKINERDLEY---IGSAPKTETKPLATVK-GKDYHVGLELDLRGERYED 718 Query: 723 AIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGGAGV 782 AI+ +++ID+A L ++SIIHGKGTG LR G+QE+L+KH+ VK++ G NEGG GV Sbjct: 719 AIVRLEKYIDDALLAGYPRVSIIHGKGTGALRKGVQEFLKKHRSVKNFHFGEANEGGTGV 778 Query: 783 TVAELQ 788 T+ EL+ Sbjct: 779 TIVELK 784 >C0Z9F1.1 MUTS2_BREBN MutS2 protein Length = 785 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/790 (50%), Positives = 517/790 (65%), Gaps = 7/790 (0%) Query: 1 LDDKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLK 60 ++ ++L TLEY KI+ L G+ +A L P + V Q T++AA V RLK Sbjct: 1 MEQRVLKTLEYDKIVALLIDKASCTYGKEKASELIPFLRLDEVINAQQGTEQAATVLRLK 60 Query: 61 GIPSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDENIPLLFA 120 G GG+ DI+ ++RA + +L ELL + +T+ RR+K FL M +D +PLL Sbjct: 61 GSVPLGGIRDIRGPVQRARLNAMLAPMELLDIASTVMAGRRLKTFLLDMCDDHELPLLQQ 120 Query: 121 QSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSV 180 Q++ + + +E IR C+DEN D+LD+AS EL +R+E+R E+RIREKLD M RSS+ Sbjct: 121 QAERIEGLRELETEIRRCVDENGDILDSASLELRQVRQEIRQLESRIREKLDQMTRSSTY 180 Query: 181 AKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXX 240 KML + +VTIRGDRFVIPVK EYR+ FGGIVHDQS SGATLFIEPE IV MNNK Sbjct: 181 QKMLMENIVTIRGDRFVIPVKQEYRSVFGGIVHDQSASGATLFIEPEVIVEMNNKLRELR 240 Query: 241 XXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGY 300 V E + + + L ELDF+FAKA+LA MKA PR+NDRGY Sbjct: 241 LREEREVERILYVLTEQVSFAVEALVENTEALTELDFMFAKAQLAWSMKAICPRINDRGY 300 Query: 301 LKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFI 360 + +RK RHPLIP E VVP+DVELG +Y +I+VTGPNTGGKTV+LKTI I Sbjct: 301 VNMRKARHPLIPREVVVPVDVELGGEYQAIVVTGPNTGGKTVSLKTIGLLSLMTMAGLHI 360 Query: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGT 420 PAEE S+M VF +I+ADIGDEQSIEQSLSTF SHMTNII IL +M KSL+L DE+GAGT Sbjct: 361 PAEEESEMTVFSSIFADIGDEQSIEQSLSTFSSHMTNIIQILAKMDDKSLVLFDELGAGT 420 Query: 421 DPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRL 480 DP EG+ALA++I++++ + R+VATTHYSELKAYAY+R VINAS+EFDVQTL PTYRL Sbjct: 421 DPTEGAALAMSIIDHVIDSGARLVATTHYSELKAYAYDRPEVINASVEFDVQTLRPTYRL 480 Query: 481 LVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXX 540 L+GVPGRSNAFAIA RLGLP I++ ARG + EED +VE MIASL Sbjct: 481 LIGVPGRSNAFAIARRLGLPEHIIDVARGSISEEDNQVESMIASLERNRKSAEADRLAAK 540 Query: 541 XXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEE 600 + E + +++KR+E+AE +A + A++EAE II +LR + + E Sbjct: 541 AARQEAEELRTQLEEERAQFAEEKNKRMERAEDEARIAVQLAKEEAETIIRELREM-MAE 599 Query: 601 GASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPR--KIQPGDEVKVQNVNQKGYVVE 658 G +KEH+LI+A++RL A +K + KA R +I+ GDEV V + QKG V+E Sbjct: 600 GMEIKEHRLIDAKKRLGNA-VLELEKEKVKKPAKAVRATQIKVGDEVMVTSFGQKGTVLE 658 Query: 659 LSGPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGT 718 +E +VQ GIMKMKV +D+ T+VKR R +NI+ +LDLRG Sbjct: 659 KVNNEEFLVQIGIMKMKVKRDDMHV--QNSIQQKPQAAPYTSVKR-RSDNIKMDLDLRGY 715 Query: 719 NLEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEG 778 N+E++I E D+F+D+A L L +SIIHG GTGVLR G+ EYLR H++VKS+RLG EG Sbjct: 716 NVEDSIREIDQFLDDALLAGLHSVSIIHGHGTGVLRKGVHEYLRSHRNVKSFRLGGQGEG 775 Query: 779 GAGVTVAELQ 788 G G T+AEL+ Sbjct: 776 GVGATIAELK 785 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,955,539,594 Number of extensions: 152798261 Number of successful extensions: 559512 Number of sequences better than 1.0e-05: 3231 Number of HSP's gapped: 550951 Number of HSP's successfully gapped: 3325 Length of query: 788 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 644 Effective length of database: 1,704,070,043 Effective search space: 1097421107692 Effective search space used: 1097421107692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)