BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0091.p
         (139 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7E0.1 B1D7E0_9BACL Putative uncharacterized protein                181   3e-44
B3KB40.1 B3KB40_9BACI Putative uncharacterized protein                171   3e-41
C0Z9F2.1 C0Z9F2_BREBN Conserved hypothetical membrane protein         160   4e-38
C3IXX0.1 C3IXX0_9BACI Putative uncharacterized protein                159   6e-38
B7Y6A3.1 B7Y6A3_9BACI Putative uncharacterized protein                159   6e-38

>B1D7E0.1 B1D7E0_9BACL Putative uncharacterized protein
          Length = 140

 Score =  181 bits (458), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 103/120 (85%)

Query: 19  YFTVAILGLVVFLSFFEMVTKYNCWEEIRKGNVAVAMATGGKIFGICNILRFSISAGVSI 78
           Y ++ +L L+VFLS FE+VT+YNCW+EI+ GN+AVAMAT GKIFGICNI RFSI A VS+
Sbjct: 19  YVSLVVLSLIVFLSVFELVTRYNCWKEIKNGNLAVAMATSGKIFGICNIFRFSIEAKVSV 78

Query: 79  YETMKWSVVGFLLLILAYFLFEFLTPVFSIDDEIAKDNRAVGLTAMMISVSLSYVIGAAI 138
           YE++ W + GF++L+ AYFLFEFLTPVF ID+EIAKDNRAVG  AM+IS+SLSYVIGA +
Sbjct: 79  YESLIWGIFGFIILLAAYFLFEFLTPVFKIDNEIAKDNRAVGFIAMIISISLSYVIGATV 138


>B3KB40.1 B3KB40_9BACI Putative uncharacterized protein
          Length = 139

 Score =  171 bits (432), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 109/138 (78%)

Query: 1   MQENIXXXXXXXXXXXXXYFTVAILGLVVFLSFFEMVTKYNCWEEIRKGNVAVAMATGGK 60
           M E I             YF+VAIL L+V+L  FE+VTKYNCW+EIRKGNVA AMATGGK
Sbjct: 1   MTEAIDHLLTHPLGVLVGYFSVAILALIVYLYCFELVTKYNCWDEIRKGNVAAAMATGGK 60

Query: 61  IFGICNILRFSISAGVSIYETMKWSVVGFLLLILAYFLFEFLTPVFSIDDEIAKDNRAVG 120
           +FGICN++R+SI+A  SIY  +KWS  GF+LL+LAY+L EFLTPVFS+D+EI KDNRAVG
Sbjct: 61  VFGICNVMRYSITANTSIYGMIKWSFFGFILLLLAYWLLEFLTPVFSVDEEIGKDNRAVG 120

Query: 121 LTAMMISVSLSYVIGAAI 138
           L  ++I+VSLSY+IGA+I
Sbjct: 121 LIVLLITVSLSYIIGASI 138


>C0Z9F2.1 C0Z9F2_BREBN Conserved hypothetical membrane protein
          Length = 136

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 98/120 (81%)

Query: 19  YFTVAILGLVVFLSFFEMVTKYNCWEEIRKGNVAVAMATGGKIFGICNILRFSISAGVSI 78
           YFTV+ L +V+FL+ FE+VT+Y  WEE+++GN+AVAMATGGKIFGI NI R+SI A +S+
Sbjct: 15  YFTVSGLAMVLFLAIFELVTRYRVWEELKRGNMAVAMATGGKIFGIANIFRYSIQAHLSL 74

Query: 79  YETMKWSVVGFLLLILAYFLFEFLTPVFSIDDEIAKDNRAVGLTAMMISVSLSYVIGAAI 138
            E + W+  GF LL+ AYF+FEF+TP F++D EIAKDNRA+G  AM++S+  SY+IGA++
Sbjct: 75  GEALIWATFGFFLLLSAYFIFEFMTPTFNVDQEIAKDNRAIGFIAMVLSIGFSYIIGASL 134


>C3IXX0.1 C3IXX0_9BACI Putative uncharacterized protein
          Length = 141

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 97/119 (81%)

Query: 20  FTVAILGLVVFLSFFEMVTKYNCWEEIRKGNVAVAMATGGKIFGICNILRFSISAGVSIY 79
           F+VA+L +VVFL+ FE+VTKY  WEEIRKGNVAVAMATGGKIFGI NI R++++   S+ 
Sbjct: 22  FSVAVLCIVVFLAVFELVTKYKNWEEIRKGNVAVAMATGGKIFGIANIFRYALARHESLP 81

Query: 80  ETMKWSVVGFLLLILAYFLFEFLTPVFSIDDEIAKDNRAVGLTAMMISVSLSYVIGAAI 138
             + W + GFLLL+ AYF++EFLTP F+IDDEIA DNRAVGL +M+ISV LS+VIG  I
Sbjct: 82  SMIGWGLYGFLLLLAAYFIYEFLTPKFNIDDEIANDNRAVGLISMVISVGLSFVIGEGI 140


>B7Y6A3.1 B7Y6A3_9BACI Putative uncharacterized protein
          Length = 141

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 97/119 (81%)

Query: 20  FTVAILGLVVFLSFFEMVTKYNCWEEIRKGNVAVAMATGGKIFGICNILRFSISAGVSIY 79
           F+VA+L +VVFL+ FE+VTKY  WEEIRKGNVAVAMATGGKIFGI NI R++++   S+ 
Sbjct: 22  FSVAVLCIVVFLAVFELVTKYKNWEEIRKGNVAVAMATGGKIFGIANIFRYALARHESLP 81

Query: 80  ETMKWSVVGFLLLILAYFLFEFLTPVFSIDDEIAKDNRAVGLTAMMISVSLSYVIGAAI 138
             + W + GFLLL+ AYF++EFLTP F+IDDEIA DNRAVGL +M+ISV LS+VIG  I
Sbjct: 82  SMIGWGLYGFLLLLAAYFIYEFLTPKFNIDDEIANDNRAVGLISMVISVGLSFVIGEGI 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.143    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 667,760,821
Number of extensions: 23855638
Number of successful extensions: 95431
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 95449
Number of HSP's successfully gapped: 129
Length of query: 139
Length of database: 3,060,696,203
Length adjustment: 103
Effective length of query: 36
Effective length of database: 2,090,331,658
Effective search space: 75251939688
Effective search space used: 75251939688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)