BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0090.p
         (183 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB41.1 B3KB41_9BACI Putative uncharacterized protein                150   5e-35
B1D7D9.1 B1D7D9_9BACL Putative uncharacterized protein                113   9e-24

>B3KB41.1 B3KB41_9BACI Putative uncharacterized protein
          Length = 187

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 117/186 (62%), Gaps = 12/186 (6%)

Query: 1   METTVCPWCHTEIVWDEEFGPEDTCPHCNNELSGYRTVTLGIDDLEDEDEPEMAGEPDQD 60
           ME TVCPWC +EIVWDEE GPEDTCPHC NEL GYRT+ + + D ++++E  +    +  
Sbjct: 1   MEPTVCPWCQSEIVWDEEIGPEDTCPHCANELKGYRTLNIALQDEDEDEEDVVEEYEEAY 60

Query: 61  PVSDE------NLWNDEDKESVVPIFNTLVQFGEDYDLKHYESKVAAILAAQLEAPECPQ 114
             SDE       +W   D ES+  +  T+ ++GED+DL  +E  V  IL  Q E PEC  
Sbjct: 61  EPSDEEARDLHRIWGS-DHESLSSL-RTVDKYGEDHDLFAFEETVEGILDQQEEVPECLH 118

Query: 115 CHELMLLSGTQKV--EGFEPSSPDELGXXXXVRHPPFALNLFVCPSCFHVQHSLAQEDRI 172
           C E ML +GTQ V  EGF+P     +     +  PP+ LN++VCP CFHVQ++LA+ DR+
Sbjct: 119 CREYMLHAGTQHVSGEGFQPVHAPLI--QAPILQPPYDLNVYVCPGCFHVQYNLAENDRL 176

Query: 173 QLVRNL 178
           +++++ 
Sbjct: 177 RMIKSF 182


>B1D7D9.1 B1D7D9_9BACL Putative uncharacterized protein
          Length = 170

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 2   ETTVCPWCHTEIVWDEEFGPEDTCPHCNNELSGYRTVTLGIDDLEDEDEPEMAGEPDQDP 61
           E T+CPWC TEIVWDEE GPE  CPHC NELSGYRT+ +GID  EDE E     + ++  
Sbjct: 3   EQTICPWCDTEIVWDEEIGPEKHCPHCENELSGYRTMQIGIDRDEDEQEDNWDEDQEKQQ 62

Query: 62  VSDENLWNDEDKESVVPIFNTLVQFGEDYDLKHYESKVAAILAAQLEAPECPQCHELMLL 121
             DE+  +D ++      F  +     +      E  +  I  +Q EAPECP C E ML 
Sbjct: 63  QQDESYSDDSNEG-----FRQM-----NVSWLAAEETIRQITDSQEEAPECPSCREYMLE 112

Query: 122 SGTQKVEGFEPSSPDELGXXXXVRHPPFALNLFVCPSCFHVQHSLAQEDRIQLVRNLS 179
           +G Q V   +P+     G    V   PF    ++CPSCF     L+   R Q++  L+
Sbjct: 113 AGKQTV-SLQPTVHAVTG--KPVIQSPFETVTYICPSCFQTSTVLSGNARNQMLELLT 167


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,154,551,967
Number of extensions: 47832612
Number of successful extensions: 175969
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 175966
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 56
Effective length of database: 1,864,227,298
Effective search space: 104396728688
Effective search space used: 104396728688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)