BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0089.p (406 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB42.1 B3KB42_9BACI Putative uncharacterized protein 449 e-124 B1D7D8.1 B1D7D8_9BACL Putative uncharacterized protein 382 e-104 C0ZFW7.1 C0ZFW7_BREBN Conserved hypothetical membrane protein 340 1e-91 C2QH65.1 C2QH65_BACCE Putative uncharacterized protein 239 4e-61 C2XZA8.1 C2XZA8_BACCE Putative uncharacterized protein 237 1e-60 >B3KB42.1 B3KB42_9BACI Putative uncharacterized protein Length = 400 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/370 (59%), Positives = 283/370 (76%), Gaps = 3/370 (0%) Query: 1 MKDSAHKQEVLLLAVNGLCSLASVLAGTFLNVYLWKNQQNFAMIGWFTVAQQVTVGLSFW 60 MK + Q +LLL+V+GL L+S L+GTFLNVYLWK++Q++ M+GWFT+AQQV +GL+FW Sbjct: 1 MKLTKDPQAMLLLSVHGLFILSSALSGTFLNVYLWKSRQDYTMLGWFTIAQQVALGLTFW 60 Query: 61 LGGKWVKEHNKMNALRLGLAVSGLFYLLVLWLGNRAVHYIWPLGLVLGIAIGLFWLAYNI 120 GKWVKEHNKMNALRLG+AVSGLFYL VLW G AVHYIWPLGL+ G+++GLFWLA+N+ Sbjct: 61 AAGKWVKEHNKMNALRLGIAVSGLFYLCVLWAGRDAVHYIWPLGLLFGVSLGLFWLAFNV 120 Query: 121 VYFEITDAGNRDFFNGWMGLLGSFTGILGPWVSGWIISALHGERGYRLVFLLSLSIYGLA 180 VYFE++ A NRD+FNGW+GLLGS TGI+GPW++GWII+ +HG++GYR +F +S++I+ + Sbjct: 121 VYFEVSSAENRDWFNGWIGLLGSITGIIGPWLAGWIITLMHGDQGYRFIFTVSMAIFAVT 180 Query: 181 VVLSFFLKKRKSEGAYLWMEPWRELHRKSSAWXXXXXXAALVFQGLREGVFSFLIGLLVY 240 VV+SFFL+KR + Y W+E L ++ W L QG+REGVFSFLI LLV+ Sbjct: 181 VVMSFFLRKRPVQSDYHWLEGVSRL-KEGGVWKYAVL--GLAVQGIREGVFSFLITLLVF 237 Query: 241 IAAKQESKLGQFALITSAVALVSYWAAGKWFTPKLRSGGMLVGGILLVAVITPLLWKVSY 300 +A QESKLGQFALITSAV+LVSYWA GKWF PK R GMLVG +L++ VI PLL+ V+Y Sbjct: 238 VATDQESKLGQFALITSAVSLVSYWACGKWFKPKFRKTGMLVGSVLMLIVIMPLLFTVNY 297 Query: 301 GTLLIMGIGTSLFLPLYMLPMTSSVFDLMGESKESAGKXXXXXXXXXXCLMCGRMLGIFV 360 TLL++GIGTSLF+PLYM+P S+ FDLMG ++E+ K L GR+ G+ V Sbjct: 298 TTLLVLGIGTSLFIPLYMMPAISASFDLMGVNQENVEKRVELVVLRELSLTIGRITGLLV 357 Query: 361 FIAVLSVNDS 370 FI VLS Sbjct: 358 FILVLSFRQD 367 >B1D7D8.1 B1D7D8_9BACL Putative uncharacterized protein Length = 429 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/368 (53%), Positives = 259/368 (70%), Gaps = 3/368 (0%) Query: 8 QEVLLLAVNGLCSLASVLAGTFLNVYLWKNQQNFAMIGWFTVAQQVTVGLSFWLGGKWVK 67 Q +LLL V GL +AS L+GTF+ VYLWK Q+F +IGW+T+ Q +T G++FWL GKWVK Sbjct: 35 QAILLLTVQGLFGVASALSGTFIPVYLWKASQSFMLIGWYTLGQYITSGITFWLAGKWVK 94 Query: 68 EHNKMNALRLGLAVSGLFYLLVLWLGNRAVHYIWPLGLVLGIAIGLFWLAYNIVYFEITD 127 EH+KM +LRLG+ +SG FY +VL LG +A Y PLG++ G+A+G +W+AYN+VYFEIT+ Sbjct: 95 EHHKMYSLRLGIVLSGAFYFMVLMLGQQAKTYSIPLGMLSGMALGFYWMAYNVVYFEITE 154 Query: 128 AGNRDFFNGWMGLLGSFTGILGPWVSGWIISALHGERGYRLVFLLSLSIYGLAVVLSFFL 187 NRD FNG G+LG+ +GI+ PWVSG++I+ LHGERGY+L+F +SL I+GLAVV SF+L Sbjct: 155 PDNRDRFNGIAGILGALSGIIAPWVSGFLITTLHGERGYKLIFTISLVIFGLAVVGSFWL 214 Query: 188 KKRKSEGA-YLWMEPWRELHRKSSAWXXXXXXAALVFQGLREGVFSFLIGLLVYIAAKQE 246 K R G Y W EL K + W A+V QG+REGVF FLIGL++YIA K E Sbjct: 215 KNRGVVGEKYKWFLGIEELKEKGNPW--RRMFGAIVTQGVREGVFMFLIGLVIYIATKNE 272 Query: 247 SKLGQFALITSAVALVSYWAAGKWFTPKLRSGGMLVGGILLVAVITPLLWKVSYGTLLIM 306 KLG F+LITS VAL+S+W GK P R ML G I++ +I PL +KVSY TLLI Sbjct: 273 GKLGNFSLITSLVALISFWFVGKRLKPSNRRVAMLAGTIMIGLIILPLFYKVSYSTLLIF 332 Query: 307 GIGTSLFLPLYMLPMTSSVFDLMGESKESAGKXXXXXXXXXXCLMCGRMLGIFVFIAVLS 366 GIGTSLF+PLY++PMTS VFDL+G S+ESA L+ GR++G+ ++ V+S Sbjct: 333 GIGTSLFIPLYIIPMTSRVFDLIGHSEESAVNREELIVLREAGLIIGRVIGLAAYLVVVS 392 Query: 367 VNDSPRVI 374 +P I Sbjct: 393 QTQTPAAI 400 >C0ZFW7.1 C0ZFW7_BREBN Conserved hypothetical membrane protein Length = 414 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 186/366 (50%), Positives = 240/366 (65%), Gaps = 3/366 (0%) Query: 6 HKQEVLLLAVNGLCSLASVLAGTFLNVYLWKNQQNFAMIGWFTVAQQVTVGLSFWLGGKW 65 Q LLL VN + A L+GTF+NVYLWK + FA I WFT A + L+FWL G + Sbjct: 16 DTQAKLLLLVNAVFIAAGSLSGTFVNVYLWKVKSQFAPIAWFTFAAHLAGALTFWLAGWY 75 Query: 66 VKEHNKMNALRLGLAVSGLFYLLVLWLGNRAVHYIWPLGLVLGIAIGLFWLAYNIVYFEI 125 VK NKMN LR G+AVS LFYLLVL G +AV Y PLGLV GIA G FWL++N+VYFEI Sbjct: 76 VKRLNKMNVLRAGMAVSALFYLLVLLAGPKAVSYAVPLGLVQGIASGFFWLSFNVVYFEI 135 Query: 126 TDAGNRDFFNGWMGLLGSFTGILGPWVSGWIISALHGERGYRLVFLLSLSIYGLAVVLSF 185 T+A NRD FNGW GLL S G+L PW+SG +I+ L G GY L+F +SL+++ + V +SF Sbjct: 136 TNADNRDLFNGWAGLLASIGGMLAPWISGLLITRLPGNSGYSLIFGISLALFVVGVFISF 195 Query: 186 FLKKRKSEGAYLWMEPWRELHRKSSAWXXXXXXAALVFQGLREGVFSFLIGLLVYIAAKQ 245 FLKKR+SEG Y W R L R+ W AL QGLREGVF F+IGLLVYI+ + Sbjct: 196 FLKKRQSEGTYSWSFSLRCL-REEPEW--RWAAGALAGQGLREGVFGFVIGLLVYISTRS 252 Query: 246 ESKLGQFALITSAVALVSYWAAGKWFTPKLRSGGMLVGGILLVAVITPLLWKVSYGTLLI 305 E LG + L TSAV LVSY+ KWF+P+ R GML G +++ ++ W+VS+ TLLI Sbjct: 253 EMTLGNYWLTTSAVGLVSYFLIAKWFSPRFRKWGMLTGSVIMWGILFVFFWQVSFTTLLI 312 Query: 306 MGIGTSLFLPLYMLPMTSSVFDLMGESKESAGKXXXXXXXXXXCLMCGRMLGIFVFIAVL 365 GI S+ PL+ +PM S++FDL+G ++ESA L GR++GI +F+ V Sbjct: 313 FGIAVSIAYPLFSVPMLSTIFDLIGTNEESARNRVEYVVLREFALDVGRLVGILIFLLVT 372 Query: 366 SVNDSP 371 S++ SP Sbjct: 373 SLSVSP 378 >C2QH65.1 C2QH65_BACCE Putative uncharacterized protein Length = 425 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 201/339 (59%), Gaps = 3/339 (0%) Query: 25 LAGTFLNVYLWKNQQNFAMIGWFTVAQQVTVGLSFWLGGKWVKEHNKMNALRLGLAVSGL 84 L+ TF+N+YLWK QN+ +G + +A V L+F +GGK+ K ++ LR+G+ + Sbjct: 32 LSNTFVNIYLWKQTQNYVNLGLYNLASVVLQPLTFLVGGKFAKRIDRSILLRIGVGTLAV 91 Query: 85 FYLLVLWLGNRAVHYIWPLGLVLGIAIGLFWLAYNIVYFEITDAGNRDFFNGWMGLLGSF 144 F+++VL G A HYI +G +LG+ G +WLA+N++ FEIT+ RDFFNG++GLL SF Sbjct: 92 FFIVVLVAGKSASHYILLMGALLGVGYGFYWLAFNLLTFEITEPETRDFFNGFLGLLTSF 151 Query: 145 TGILGPWVSGWIISALHGERGYRLVFLLSLSIYGLAVVLSFFLKKRKSEGAYLWMEPWRE 204 +G++GP +G+ IS + GY ++F LSL ++ +AVVLSFFL KR+ EG Y ME +E Sbjct: 152 SGMIGPIAAGYTISRMEKWSGYTVIFFLSLVLFAIAVVLSFFLSKRECEGRYEVMEVLKE 211 Query: 205 LHRKSSAWXXXXXXAALVFQGLREGVFSFLIGLLVYIAAKQESKLGQFALITSAVALVSY 264 R W A FQGLREG F F+I + VY+A E LG+++L+ S V+ + Y Sbjct: 212 -RRIDKNW--GRITRAHFFQGLREGTFIFVISVYVYLATDSELALGKYSLVNSTVSFICY 268 Query: 265 WAAGKWFTPKLRSGGMLVGGILLVAVITPLLWKVSYGTLLIMGIGTSLFLPLYMLPMTSS 324 + + + R +L+GGI+L AV+ +++ V+Y LLI ++ P+ ++P S Sbjct: 269 YLVARMLKKEWRKKAILLGGIILYAVVFLVIFNVTYTKLLIYAACIAIAYPILLVPYGSM 328 Query: 325 VFDLMGESKESAGKXXXXXXXXXXCLMCGRMLGIFVFIA 363 +D++G +K + L GR+ I F+ Sbjct: 329 TYDVIGRAKNAREWRVEYVVVRELWLNAGRICSILSFLC 367 >C2XZA8.1 C2XZA8_BACCE Putative uncharacterized protein Length = 425 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 206/344 (59%), Gaps = 3/344 (0%) Query: 20 SLASVLAGTFLNVYLWKNQQNFAMIGWFTVAQQVTVGLSFWLGGKWVKEHNKMNALRLGL 79 +LA L+ TF+N+YLWK QN+ +G + +A V L+F +GGK K ++ LR+G+ Sbjct: 27 TLAISLSNTFVNIYLWKQTQNYVNLGLYNLASVVLQPLTFLVGGKLAKRIDRSILLRIGV 86 Query: 80 AVSGLFYLLVLWLGNRAVHYIWPLGLVLGIAIGLFWLAYNIVYFEITDAGNRDFFNGWMG 139 +F+++VL G A HYI +G +LG+ G +WLA+N++ FEIT+ RDFFNG++G Sbjct: 87 GTLAVFFIVVLVAGKSASHYILLMGALLGVGYGFYWLAFNLLTFEITEPETRDFFNGFLG 146 Query: 140 LLGSFTGILGPWVSGWIISALHGERGYRLVFLLSLSIYGLAVVLSFFLKKRKSEGAYLWM 199 LL SF+G++GP +G+ IS + GY +VF LSL ++ +AVVLSFFL KR+ EG Y + Sbjct: 147 LLTSFSGMIGPIAAGYTISRMEKWSGYTVVFFLSLMLFAVAVVLSFFLSKRECEGRYEIV 206 Query: 200 EPWRELHRKSSAWXXXXXXAALVFQGLREGVFSFLIGLLVYIAAKQESKLGQFALITSAV 259 + +E + W A FQGLREG F F+I + VY+A+ E LG+++L+ SAV Sbjct: 207 QVLKE-RQVDENW--GRITRAHFFQGLREGTFIFVISVYVYLASGSELALGKYSLVNSAV 263 Query: 260 ALVSYWAAGKWFTPKLRSGGMLVGGILLVAVITPLLWKVSYGTLLIMGIGTSLFLPLYML 319 + V Y+ + + R +L+GGI+L AV+ +++ V+Y LLI ++ P+ ++ Sbjct: 264 SFVCYYLVARMLKKEWRKKAILLGGIILYAVVFLVIFNVTYTKLLIYAACIAVAYPILLV 323 Query: 320 PMTSSVFDLMGESKESAGKXXXXXXXXXXCLMCGRMLGIFVFIA 363 P S +D++G +K++ L GR+ I F+ Sbjct: 324 PYGSMTYDVIGRAKQAREWRVEYIVVRELWLNAGRICSILSFLC 367 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,187,722,918 Number of extensions: 94045045 Number of successful extensions: 356465 Number of sequences better than 1.0e-05: 108 Number of HSP's gapped: 356376 Number of HSP's successfully gapped: 108 Length of query: 406 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 268 Effective length of database: 1,760,596,133 Effective search space: 471839763644 Effective search space used: 471839763644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)