BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0085.p (510 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q92ET4.1 Q92ET4_LISIN Lin0374 protein 771 0.0 Q4EQ98.1 Q4EQ98_LISMO Fumarate reductase, flavoprotein subunit E... 769 0.0 Q8YA11.1 Q8YA11_LISMO Lmo0355 protein 769 0.0 Q723U9.1 Q723U9_LISMF Fumarate reductase, flavoprotein subunit E... 759 0.0 C1KZ71.1 C1KZ71_LISMC Putative Flavocytochrome C Fumarate Reduct... 759 0.0 >Q92ET4.1 Q92ET4_LISIN Lin0374 protein Length = 506 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/510 (76%), Positives = 439/510 (86%), Gaps = 4/510 (0%) Query: 1 MKKKTGAALILILSVMLVIXXXXXXXXXXXXXXXXXDNEAKKETTEAVSGASEASYTPYD 60 MKK+ LI++LS+ L+I + KE TE SGAS+ SYT Sbjct: 1 MKKRIATTLIMLLSLALIIAGCGSNNTSKSDSAKTKE----KEKTEVTSGASKTSYTDPS 56 Query: 61 QLKDKYDIIIVGAGGAGMSAALEAKAKGMNPVILEKMPVAGGNTTKSSSGMNASQTKFQK 120 +LKDKYDI+IVGAGGAGMSAALEAK+KGMNPVILEKMP+AGGNT K+SSGMNAS+TKFQK Sbjct: 57 ELKDKYDIVIVGAGGAGMSAALEAKSKGMNPVILEKMPLAGGNTMKASSGMNASETKFQK 116 Query: 121 EQGIEDSNDLFYEETLKGGHDTNDKELLRFFVDNSAGAIDWLDSIGIRLNNITITGGMKE 180 EQGI DSND FYEETLKGGH TNDK +LRFFVDNSA AIDWLDS+ I+LNN+TITGGM E Sbjct: 117 EQGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDSMDIKLNNLTITGGMSE 176 Query: 181 KRTHRPEDGSAVGQYLVKGLVKNVQEQGIPLFVNADVKEITEKDGKVTGVKVLFNQADEK 240 KRTHRPEDGSAVG+YLV GL+KNVQEQ IP+FVNADVKEIT+KDGKVTGVKV N DEK Sbjct: 177 KRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQKDGKVTGVKVKLNNKDEK 236 Query: 241 TITGSAVIVTTGGFGANKEMIAEVRPDLEGLVTTNQVGSTGDGIKMIEKLGGTTVDMDQI 300 TI+ +AV+VTTGG+GANK+MI + RPDL+G VTTNQ GSTGDGIKMIEKLGGTTVDMDQI Sbjct: 237 TISSNAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQI 296 Query: 301 QVHPTVQQEKSYLIGEAVRGEGAILVSSEGKRFTNEMDTRDHVTAAINKLPEKAAILVFD 360 QVHPTVQQ+KSYLIGEAVRGEGAILVS EGKRF NE+DTRD+VTA+INKLPEK+A L+FD Sbjct: 297 QVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELDTRDNVTASINKLPEKSAYLIFD 356 Query: 361 SGVKSRVKAIEQYEKMGFVLTSDSIEGLAKEMNVPADELQKTMDTWNSAVKNKKDAEFGR 420 SGVK RVKAI QYE+MGFV +I+ LA ++NVP +EL KT+DTWN++VKNKKD FGR Sbjct: 357 SGVKDRVKAIAQYEEMGFVEEGKTIDELASKINVPKEELTKTLDTWNASVKNKKDEAFGR 416 Query: 421 TTGMDNDLSGAPFYAIKIGPGIHYTMGGVKINTNTEVLNKEGQPITGLFAAGEVVGGLHG 480 TT MDNDLS AP+YAIKIGPGIHYTMGGVKINTNTEVL+K+G+PITGLFAAGEV GGLHG Sbjct: 417 TTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTNTEVLDKDGKPITGLFAAGEVTGGLHG 476 Query: 481 QNRIGGNSVAEIIIFGRQAGIKSAEFVKAQ 510 +NRIGGNSVAEIIIFGRQAG KSAEFVKA+ Sbjct: 477 ENRIGGNSVAEIIIFGRQAGDKSAEFVKAK 506 >Q4EQ98.1 Q4EQ98_LISMO Fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 506 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/510 (76%), Positives = 438/510 (85%), Gaps = 4/510 (0%) Query: 1 MKKKTGAALILILSVMLVIXXXXXXXXXXXXXXXXXDNEAKKETTEAVSGASEASYTPYD 60 MKK+ +I++LS+ L+I + KE TE SGAS+ SYT Sbjct: 1 MKKRLATTIIMLLSLALIIAGCGNNDTSKSDTAKTKE----KEKTEVTSGASKTSYTDPS 56 Query: 61 QLKDKYDIIIVGAGGAGMSAALEAKAKGMNPVILEKMPVAGGNTTKSSSGMNASQTKFQK 120 +LKDKYDI+IVGAGGAGMSAALEAKAKGMNPVILEKMP+AGGNT K+SSGMNAS+TKFQK Sbjct: 57 ELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMKASSGMNASETKFQK 116 Query: 121 EQGIEDSNDLFYEETLKGGHDTNDKELLRFFVDNSAGAIDWLDSIGIRLNNITITGGMKE 180 E+GI DSND FYEETLKGGH TNDK +LRFFVDNSA AIDWLDS+ I+LNN+TITGGM E Sbjct: 117 EEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDSMDIKLNNLTITGGMSE 176 Query: 181 KRTHRPEDGSAVGQYLVKGLVKNVQEQGIPLFVNADVKEITEKDGKVTGVKVLFNQADEK 240 KRTHRPEDGSAVG+YLV GL+KNVQEQ IP+FVNADVKEIT+KDGKVTGVKV N DEK Sbjct: 177 KRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQKDGKVTGVKVKLNNKDEK 236 Query: 241 TITGSAVIVTTGGFGANKEMIAEVRPDLEGLVTTNQVGSTGDGIKMIEKLGGTTVDMDQI 300 TI+ AV+VTTGG+GANK+MI + RPDL+G VTTNQ GSTGDGIKMIEKLGGTTVDMDQI Sbjct: 237 TISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQI 296 Query: 301 QVHPTVQQEKSYLIGEAVRGEGAILVSSEGKRFTNEMDTRDHVTAAINKLPEKAAILVFD 360 QVHPTVQQ+KSYLIGEAVRGEGAILVS EGKRF NE+DTRD+VTA+INKLPEK+A LVFD Sbjct: 297 QVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELDTRDNVTASINKLPEKSAYLVFD 356 Query: 361 SGVKSRVKAIEQYEKMGFVLTSDSIEGLAKEMNVPADELQKTMDTWNSAVKNKKDAEFGR 420 SGVK RVKAI QYE+MGFV +I+ LA ++NVP +EL KT+DTWN++VKNKKD FGR Sbjct: 357 SGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPKEELTKTLDTWNASVKNKKDEAFGR 416 Query: 421 TTGMDNDLSGAPFYAIKIGPGIHYTMGGVKINTNTEVLNKEGQPITGLFAAGEVVGGLHG 480 TT MDNDLS AP+YAIKIGPGIHYTMGGVKINTNTEVL+K+G+PITGLFAAGEV GGLHG Sbjct: 417 TTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTNTEVLDKDGKPITGLFAAGEVTGGLHG 476 Query: 481 QNRIGGNSVAEIIIFGRQAGIKSAEFVKAQ 510 +NRIGGNSVAEIIIFGRQAG KSAEFVKAQ Sbjct: 477 ENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ 506 >Q8YA11.1 Q8YA11_LISMO Lmo0355 protein Length = 506 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/510 (76%), Positives = 438/510 (85%), Gaps = 4/510 (0%) Query: 1 MKKKTGAALILILSVMLVIXXXXXXXXXXXXXXXXXDNEAKKETTEAVSGASEASYTPYD 60 MKK+ +I++LS+ L+I + KE TE SGAS+ SYT Sbjct: 1 MKKRLATTIIMLLSLALIIAGCGNNDTSKSDTAKTKE----KEKTEVTSGASKTSYTDPS 56 Query: 61 QLKDKYDIIIVGAGGAGMSAALEAKAKGMNPVILEKMPVAGGNTTKSSSGMNASQTKFQK 120 +LKDKYDI+IVGAGGAGMSAALEAKAKGMNPVILEKMP+AGGNT K+SSGMNAS+TKFQK Sbjct: 57 ELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMKASSGMNASETKFQK 116 Query: 121 EQGIEDSNDLFYEETLKGGHDTNDKELLRFFVDNSAGAIDWLDSIGIRLNNITITGGMKE 180 E+GI DSND FYEETLKGGH TNDK +LRFFVDNSA AIDWLDS+ I+LNN+TITGGM E Sbjct: 117 EEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDSMDIKLNNLTITGGMSE 176 Query: 181 KRTHRPEDGSAVGQYLVKGLVKNVQEQGIPLFVNADVKEITEKDGKVTGVKVLFNQADEK 240 KRTHRPEDGSAVG+YLV GL+KNVQEQ IP+FVNADVKEIT+KDGKVTGV+V N DEK Sbjct: 177 KRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQKDGKVTGVRVKLNNKDEK 236 Query: 241 TITGSAVIVTTGGFGANKEMIAEVRPDLEGLVTTNQVGSTGDGIKMIEKLGGTTVDMDQI 300 TI+ AV+VTTGG+GANK+MI + RPDL+G VTTNQ GSTGDGIKMIEKLGGTTVDMDQI Sbjct: 237 TISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQI 296 Query: 301 QVHPTVQQEKSYLIGEAVRGEGAILVSSEGKRFTNEMDTRDHVTAAINKLPEKAAILVFD 360 QVHPTVQQ+KSYLIGEAVRGEGAILVS EGKRF NE+DTRD+VTA+INKLPEK+A LVFD Sbjct: 297 QVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELDTRDNVTASINKLPEKSAYLVFD 356 Query: 361 SGVKSRVKAIEQYEKMGFVLTSDSIEGLAKEMNVPADELQKTMDTWNSAVKNKKDAEFGR 420 SGVK RVKAI QYE+MGFV +I+ LA ++NVP +EL KT+DTWN++VKNKKD FGR Sbjct: 357 SGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPKEELTKTLDTWNASVKNKKDEAFGR 416 Query: 421 TTGMDNDLSGAPFYAIKIGPGIHYTMGGVKINTNTEVLNKEGQPITGLFAAGEVVGGLHG 480 TT MDNDLS AP+YAIKIGPGIHYTMGGVKINTNTEVL+K+G+PITGLFAAGEV GGLHG Sbjct: 417 TTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTNTEVLDKDGKPITGLFAAGEVTGGLHG 476 Query: 481 QNRIGGNSVAEIIIFGRQAGIKSAEFVKAQ 510 +NRIGGNSVAEIIIFGRQAG KSAEFVKAQ Sbjct: 477 ENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ 506 >Q723U9.1 Q723U9_LISMF Fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 506 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/510 (76%), Positives = 437/510 (85%), Gaps = 4/510 (0%) Query: 1 MKKKTGAALILILSVMLVIXXXXXXXXXXXXXXXXXDNEAKKETTEAVSGASEASYTPYD 60 MKK+ I++LS+ L+I +KE TE SGAS+ SYT Sbjct: 1 MKKRLATTFIMLLSLALIIAGCGSNNTSKSDTEK----TKEKEKTEVTSGASKTSYTDPS 56 Query: 61 QLKDKYDIIIVGAGGAGMSAALEAKAKGMNPVILEKMPVAGGNTTKSSSGMNASQTKFQK 120 +LKDKYDI+IVGAGGAGMSAALEAKAKGMNPVILEKMP+AGGNT K+SSGMNAS+TKFQK Sbjct: 57 ELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMKASSGMNASETKFQK 116 Query: 121 EQGIEDSNDLFYEETLKGGHDTNDKELLRFFVDNSAGAIDWLDSIGIRLNNITITGGMKE 180 E+GI DSND FYEETLKGGH TNDK +LRFFVDNSA AIDWLDS+ I+LNN+TITGGM E Sbjct: 117 EEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDSMDIKLNNLTITGGMSE 176 Query: 181 KRTHRPEDGSAVGQYLVKGLVKNVQEQGIPLFVNADVKEITEKDGKVTGVKVLFNQADEK 240 KRTHRPEDGSAVG+YLV GL+KNVQEQ IP+FVNADVKEIT+KDGKVTGVKV N DEK Sbjct: 177 KRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQKDGKVTGVKVKLNNKDEK 236 Query: 241 TITGSAVIVTTGGFGANKEMIAEVRPDLEGLVTTNQVGSTGDGIKMIEKLGGTTVDMDQI 300 TI+ AV+VTTGG+GANK+MI + RPDL+G VTTNQ GSTGDGIKMIEKLGGTTVDMDQI Sbjct: 237 TISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQI 296 Query: 301 QVHPTVQQEKSYLIGEAVRGEGAILVSSEGKRFTNEMDTRDHVTAAINKLPEKAAILVFD 360 QVHPTVQQ+KSYLIGEAVRGEGAILVS EGKRF NE+DTRD+VTA+INKLPEK+A LVFD Sbjct: 297 QVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELDTRDNVTASINKLPEKSAYLVFD 356 Query: 361 SGVKSRVKAIEQYEKMGFVLTSDSIEGLAKEMNVPADELQKTMDTWNSAVKNKKDAEFGR 420 SGVK RVKAI QYE+MGFV +I+ LA ++NVP +EL KT+DTWN++VKNKKD FGR Sbjct: 357 SGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPKEELTKTLDTWNASVKNKKDEAFGR 416 Query: 421 TTGMDNDLSGAPFYAIKIGPGIHYTMGGVKINTNTEVLNKEGQPITGLFAAGEVVGGLHG 480 TT MDNDLS AP+YAIKIGPGIHYTMGGVKINTNTEVL+K+G+PITGLFAAGEV GGLHG Sbjct: 417 TTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTNTEVLDKDGKPITGLFAAGEVTGGLHG 476 Query: 481 QNRIGGNSVAEIIIFGRQAGIKSAEFVKAQ 510 +NRIGGNSVAEIIIFGRQAG KSAEFVKAQ Sbjct: 477 ENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ 506 >C1KZ71.1 C1KZ71_LISMC Putative Flavocytochrome C Fumarate Reductase chain A Length = 506 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/510 (76%), Positives = 437/510 (85%), Gaps = 4/510 (0%) Query: 1 MKKKTGAALILILSVMLVIXXXXXXXXXXXXXXXXXDNEAKKETTEAVSGASEASYTPYD 60 MKK+ I++LS+ L+I +KE TE SGAS+ SYT Sbjct: 1 MKKRLATTFIMLLSLALIIAGCGSNNTSKSDTEK----TKEKEKTEVTSGASKTSYTDPS 56 Query: 61 QLKDKYDIIIVGAGGAGMSAALEAKAKGMNPVILEKMPVAGGNTTKSSSGMNASQTKFQK 120 +LKDKYDI+IVGAGGAGMSAALEAKAKGMNPVILEKMP+AGGNT K+SSGMNAS+TKFQK Sbjct: 57 ELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMKASSGMNASETKFQK 116 Query: 121 EQGIEDSNDLFYEETLKGGHDTNDKELLRFFVDNSAGAIDWLDSIGIRLNNITITGGMKE 180 E+GI DSND FYEETLKGGH TNDK +LRFFVDNSA AIDWLDS+ I+LNN+TITGGM E Sbjct: 117 EEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDSMDIKLNNLTITGGMSE 176 Query: 181 KRTHRPEDGSAVGQYLVKGLVKNVQEQGIPLFVNADVKEITEKDGKVTGVKVLFNQADEK 240 KRTHRPEDGSAVG+YLV GL+KNVQEQ IP+FVNADVKEIT+KDGKVTGVKV N DEK Sbjct: 177 KRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQKDGKVTGVKVKLNNKDEK 236 Query: 241 TITGSAVIVTTGGFGANKEMIAEVRPDLEGLVTTNQVGSTGDGIKMIEKLGGTTVDMDQI 300 TI+ AV+VTTGG+GANK+MI + RPDL+G VTTNQ GSTGDGIKMIEKLGGTTVDMDQI Sbjct: 237 TISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQI 296 Query: 301 QVHPTVQQEKSYLIGEAVRGEGAILVSSEGKRFTNEMDTRDHVTAAINKLPEKAAILVFD 360 QVHPTVQQ+KSYLIGEAVRGEGAILVS EGKRF NE+DTRD+VTA+INKLPEK+A LVFD Sbjct: 297 QVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELDTRDNVTASINKLPEKSAYLVFD 356 Query: 361 SGVKSRVKAIEQYEKMGFVLTSDSIEGLAKEMNVPADELQKTMDTWNSAVKNKKDAEFGR 420 SGVK RVKAI QYE+MGFV +I+ LA ++NVP +EL KT+DTWN++VKNKKD FGR Sbjct: 357 SGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPKEELTKTLDTWNASVKNKKDEAFGR 416 Query: 421 TTGMDNDLSGAPFYAIKIGPGIHYTMGGVKINTNTEVLNKEGQPITGLFAAGEVVGGLHG 480 TT MDNDLS AP+YAIKIGPGIHYTMGGVKINTNTEVL+K+G+PITGLFAAGEV GGLHG Sbjct: 417 TTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTNTEVLDKDGKPITGLFAAGEVTGGLHG 476 Query: 481 QNRIGGNSVAEIIIFGRQAGIKSAEFVKAQ 510 +NRIGGNSVAEIIIFGRQAG KSAEFVKAQ Sbjct: 477 ENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ 506 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,898,408,640 Number of extensions: 129164790 Number of successful extensions: 377311 Number of sequences better than 1.0e-05: 3979 Number of HSP's gapped: 369916 Number of HSP's successfully gapped: 5272 Length of query: 510 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 370 Effective length of database: 1,741,754,103 Effective search space: 644449018110 Effective search space used: 644449018110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)