BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0084.p (429 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB43.1 B3KB43_9BACI FAD dependent oxidoreductase 373 e-101 C2XR54.1 C2XR54_BACCE Oxidoreductase 335 4e-90 C3FHC5.1 C3FHC5_BACTB Oxidoreductase 335 7e-90 C3CYU2.1 C3CYU2_BACTU Oxidoreductase 335 7e-90 C3CFY7.1 C3CFY7_BACTU Oxidoreductase 335 7e-90 >B3KB43.1 B3KB43_9BACI FAD dependent oxidoreductase Length = 408 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/400 (46%), Positives = 254/400 (63%), Gaps = 3/400 (0%) Query: 1 MKLISGRVPWERTLPHFPV--YPVLDGDITCDCLIVGGGMGGAMASYRLSSSGASTVLID 58 M L G PW + L PV YPVL ++CD L+VGGG+ GA+ +Y LS G +L++ Sbjct: 1 MLLTGGTTPW-KYLNTEPVKKYPVLSDRLSCDVLVVGGGISGALMAYVLSVQGVDAILLE 59 Query: 59 KYAVGKGSTCANTGLLQVTSDKSLTSCMNTFGADNGLLFYKLCRKAMEDILKLPGALDID 118 K V +GST ANTGLLQ+++D L++ + FG D G FY +CR A+ + ++ L D Sbjct: 60 KSRVCEGSTSANTGLLQISNDCPLSNLIQHFGEDRGTAFYMMCRNAIRRLTEIANTLSRD 119 Query: 119 PHIIPRSSLLYASSPEDVTALKLEHEHLAAHGFDTEFWEEDKIRAHYSFAKPAAIYSRGD 178 +I RSSL YAS+P+D+ ++ E++ L GFD ++W D ++A + F+K AAIY+RGD Sbjct: 120 SGLISRSSLYYASNPQDIGLIRHEYDLLKRKGFDVQYWNRDDVKAKFPFSKEAAIYTRGD 179 Query: 179 AETNPFRMLHSLIHKAHASGVRVYEHTKARHFDFGTDGVTCYTESGRIFANHVIFALGYE 238 AE NP+R+ H L+ A G+R+YE+++ + + + VT T+ G + A HVI+A GY Sbjct: 180 AEVNPYRLGHHLLQDAGDQGLRIYENSEVKETRYTHNDVTVMTDQGSVSAKHVIWATGYS 239 Query: 239 TQEMKKDRGAELNYTYAIMTRPLKNLPRWHEQSLIWETARPYLYFRTTNDGRIIAGGKDE 298 TQE K D +L TYAIMT P+ +L W+E++LIWET RPYLYFRTT D RI+AGG DE Sbjct: 240 TQEWKPDYQVDLLNTYAIMTEPVHDLSSWYERALIWETDRPYLYFRTTPDRRIMAGGLDE 299 Query: 299 QLPDPGQXXXXXXXXXXXXXXXXXXXFPEIKGAAAEFAWGGVFGTSHDGLPFIGPHPEYP 358 LP G+ FP + +W GVF ++ DG+P IG HP+YP Sbjct: 300 PLPPSGKPEEYAEPRSQRLLNEIHKLFPTMTDLKMACSWAGVFASTKDGIPLIGRHPQYP 359 Query: 359 HCYFIEGYGGNGTVYSMLAAELLADTLAGISRPELELFSL 398 H YFIE YGGNG VYSM+AA+LLA+T+AG EL+ FSL Sbjct: 360 HSYFIEVYGGNGMVYSMIAADLLAETIAGREPEELKWFSL 399 >C2XR54.1 C2XR54_BACCE Oxidoreductase Length = 397 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 171/398 (42%), Positives = 235/398 (59%), Gaps = 3/398 (0%) Query: 1 MKLISGRVPWERTLPHFPVYPVLDGDITCDCLIVGGGMGGAMASYRLSSSGASTVLIDKY 60 MKL++G++ W + P YP L+ D+ CD L++G G GA +Y L+ G +LI+K Sbjct: 1 MKLMTGKLFWNSGVS-VPCYPTLENDMICDVLVIGSGEAGAHIAYSLAKIGMRVMLIEKR 59 Query: 61 AVGKGSTCANTGLLQVTSDKSLTSCMNTFGADNGLLFYKLCRKAMEDILKLPGALDIDPH 120 A+ GST ANTGLLQ DKSLTS ++TFG + G+ Y+LC +A++ + K+ LDIDPH Sbjct: 60 AIACGSTAANTGLLQFVHDKSLTSLIHTFGEEKGVRAYRLCYEALQTMEKVVPTLDIDPH 119 Query: 121 IIPRSSLLYASSPEDVTALKLEHEHLAAHGFDTEFWEEDKIRAHYSFAKPAAIYSRGDAE 180 IPR+SL YAS EDV+ L+ E+ L +GF E++ E I+ YSFAK AA+Y+ GDAE Sbjct: 120 FIPRNSLYYASRDEDVSFLQEEYNTLRHYGFPVEYFTESDIKKRYSFAKQAALYTSGDAE 179 Query: 181 TNPFRMLHSLIHKAHASGVRVYEHTKARHFDFGTDGVTCYTESG-RIFANHVIFALGYET 239 NP+ + HSL+HKA G +YEHT+A H + + CYT +G +I A ++I A GYE Sbjct: 180 VNPYLLAHSLLHKAKQMGATIYEHTEALHIKQIQNDLICYTNTGNKIVAKNIIMATGYEA 239 Query: 240 QEMKKDRGAELNYTYAIMTRPLKNLPRWHEQSLIWETARPYLYFRTTNDGRIIAGGKDEQ 299 KK++ + +YA++T + WHEQSLIWETARPYLY RT + RI+ GG DE Sbjct: 240 IFGKKEKNTTVETSYAVVTNKIDYFEGWHEQSLIWETARPYLYSRTYQN-RIVIGGLDEA 298 Query: 300 LPDPGQXXXXXXXXXXXXXXXXXXXFPEIKGAAAEFAWGGVFGTSHDGLPFIGPHPEYPH 359 L FP+ K AE+ W FG SHDGLP + + P+ Sbjct: 299 LKIQKIGDTKLLHKRDLLINIVKEMFPQYKNIRAEYYWAAAFGGSHDGLPILKEDKKIPN 358 Query: 360 CYFIEGYGGNGTVYSMLAAELLADTLAGISRPELELFS 397 Y+ YGGNGTVY M+ A+L + LF+ Sbjct: 359 LYYALPYGGNGTVYGMVFAKLFQQLFTNEESDDFSLFN 396 >C3FHC5.1 C3FHC5_BACTB Oxidoreductase Length = 397 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 170/398 (42%), Positives = 239/398 (60%), Gaps = 3/398 (0%) Query: 1 MKLISGRVPWERTLPHFPVYPVLDGDITCDCLIVGGGMGGAMASYRLSSSGASTVLIDKY 60 MKL++G++ W T P YP+L+ D+ CD L+VG G GA ++ L+ G S LI+K Sbjct: 1 MKLMNGKLFW-NTGVSVPCYPLLENDMICDVLVVGSGEAGAHIAHSLAKIGMSVTLIEKR 59 Query: 61 AVGKGSTCANTGLLQVTSDKSLTSCMNTFGADNGLLFYKLCRKAMEDILKLPGALDIDPH 120 A+G GST ANTGLLQ DKSLTS ++TFG + G+ YKLC +A+ + ++ LDIDPH Sbjct: 60 AIGCGSTAANTGLLQFLHDKSLTSLIHTFGKEKGVRAYKLCYEALRTMEEVIPTLDIDPH 119 Query: 121 IIPRSSLLYASSPEDVTALKLEHEHLAAHGFDTEFWEEDKIRAHYSFAKPAAIYSRGDAE 180 IPR+SL YAS EDV+ L+ E+ L +GF E++ E I+ YSFAK AA+Y++GDAE Sbjct: 120 FIPRNSLYYASKSEDVSFLQEEYNTLQNYGFPVEYFTEADIKKRYSFAKQAALYTQGDAE 179 Query: 181 TNPFRMLHSLIHKAHASGVRVYEHTKARHFDFGTDGVTCYTESG-RIFANHVIFALGYET 239 NP+ ++HS +HKA+ G +YEHT+A H + + CYT++G +I A ++I A GYE Sbjct: 180 VNPYLLVHSFLHKANQIGANIYEHTEAIHIKKRQNDLICYTKTGNQIVAKNIIMATGYEA 239 Query: 240 QEMKKDRGAELNYTYAIMTRPLKNLPRWHEQSLIWETARPYLYFRTTNDGRIIAGGKDEQ 299 KK++ + +YAI+T + WHE+SLIWET RPYLYFRT + RII GG DE Sbjct: 240 LFGKKEKNTTVETSYAIVTNEIDQFEGWHERSLIWETERPYLYFRTYRN-RIIVGGLDEA 298 Query: 300 LPDPGQXXXXXXXXXXXXXXXXXXXFPEIKGAAAEFAWGGVFGTSHDGLPFIGPHPEYPH 359 + FP+ K A++ W FG +HDGLP + + + Sbjct: 299 MQIQTIGDTKLLHKRDILINIVKEMFPQYKNIQADYYWAAAFGGTHDGLPILKEDEKIHN 358 Query: 360 CYFIEGYGGNGTVYSMLAAELLADTLAGISRPELELFS 397 ++ YGGNGTVY M+ A+L R + LF+ Sbjct: 359 LFYALPYGGNGTVYGMVFAKLFEQLFTNKEREDFSLFN 396 >C3CYU2.1 C3CYU2_BACTU Oxidoreductase Length = 397 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 170/398 (42%), Positives = 239/398 (60%), Gaps = 3/398 (0%) Query: 1 MKLISGRVPWERTLPHFPVYPVLDGDITCDCLIVGGGMGGAMASYRLSSSGASTVLIDKY 60 MKL++G++ W T P YP+L+ D+ CD L+VG G GA ++ L+ G S LI+K Sbjct: 1 MKLMNGKLFW-NTGVSVPCYPLLENDMICDVLVVGSGEAGAHIAHSLAKIGMSVTLIEKR 59 Query: 61 AVGKGSTCANTGLLQVTSDKSLTSCMNTFGADNGLLFYKLCRKAMEDILKLPGALDIDPH 120 A+G GST ANTGLLQ DKSLTS ++TFG + G+ YKLC +A+ + ++ LDIDPH Sbjct: 60 AIGCGSTAANTGLLQFLHDKSLTSLIHTFGKEKGVRAYKLCYEALRTMEEVIPTLDIDPH 119 Query: 121 IIPRSSLLYASSPEDVTALKLEHEHLAAHGFDTEFWEEDKIRAHYSFAKPAAIYSRGDAE 180 IPR+SL YAS EDV+ L+ E+ L +GF E++ E I+ YSFAK AA+Y++GDAE Sbjct: 120 FIPRNSLYYASKSEDVSFLQEEYNTLQNYGFPVEYFTEADIKKRYSFAKQAALYTQGDAE 179 Query: 181 TNPFRMLHSLIHKAHASGVRVYEHTKARHFDFGTDGVTCYTESG-RIFANHVIFALGYET 239 NP+ ++HS +HKA+ G +YEHT+A H + + CYT++G +I A ++I A GYE Sbjct: 180 VNPYLLVHSFLHKANQIGANIYEHTEAIHIKKRQNDLICYTKTGNQIVAKNIIMATGYEA 239 Query: 240 QEMKKDRGAELNYTYAIMTRPLKNLPRWHEQSLIWETARPYLYFRTTNDGRIIAGGKDEQ 299 KK++ + +YAI+T + WHE+SLIWET RPYLYFRT + RII GG DE Sbjct: 240 LFGKKEKNTTVETSYAIVTNEIDQFEGWHERSLIWETERPYLYFRTYRN-RIIVGGLDEA 298 Query: 300 LPDPGQXXXXXXXXXXXXXXXXXXXFPEIKGAAAEFAWGGVFGTSHDGLPFIGPHPEYPH 359 + FP+ K A++ W FG +HDGLP + + + Sbjct: 299 MQIQTIGDTKLLHKRDILINIVKEMFPQYKNIQADYYWAAAFGGTHDGLPILKEDEKIHN 358 Query: 360 CYFIEGYGGNGTVYSMLAAELLADTLAGISRPELELFS 397 ++ YGGNGTVY M+ A+L R + LF+ Sbjct: 359 LFYALPYGGNGTVYGMVFAKLFEQLFTNKEREDFSLFN 396 >C3CFY7.1 C3CFY7_BACTU Oxidoreductase Length = 397 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 170/398 (42%), Positives = 239/398 (60%), Gaps = 3/398 (0%) Query: 1 MKLISGRVPWERTLPHFPVYPVLDGDITCDCLIVGGGMGGAMASYRLSSSGASTVLIDKY 60 MKL++G++ W T P YP+L+ D+ CD L+VG G GA ++ L+ G S LI+K Sbjct: 1 MKLMNGKLFW-NTGVSVPCYPLLENDMICDVLVVGSGEAGAHIAHSLAKIGMSVTLIEKR 59 Query: 61 AVGKGSTCANTGLLQVTSDKSLTSCMNTFGADNGLLFYKLCRKAMEDILKLPGALDIDPH 120 A+G GST ANTGLLQ DKSLTS ++TFG + G+ YKLC +A+ + ++ LDIDPH Sbjct: 60 AIGCGSTAANTGLLQFLHDKSLTSLIHTFGKEKGVRAYKLCYEALRTMEEVIPTLDIDPH 119 Query: 121 IIPRSSLLYASSPEDVTALKLEHEHLAAHGFDTEFWEEDKIRAHYSFAKPAAIYSRGDAE 180 IPR+SL YAS EDV+ L+ E+ L +GF E++ E I+ YSFAK AA+Y++GDAE Sbjct: 120 FIPRNSLYYASKSEDVSFLQEEYNTLQNYGFPVEYFTEADIKKRYSFAKQAALYTQGDAE 179 Query: 181 TNPFRMLHSLIHKAHASGVRVYEHTKARHFDFGTDGVTCYTESG-RIFANHVIFALGYET 239 NP+ ++HS +HKA+ G +YEHT+A H + + CYT++G +I A ++I A GYE Sbjct: 180 VNPYLLVHSFLHKANQIGANIYEHTEAIHIKKRQNDLICYTKTGNQIVAKNIIMATGYEA 239 Query: 240 QEMKKDRGAELNYTYAIMTRPLKNLPRWHEQSLIWETARPYLYFRTTNDGRIIAGGKDEQ 299 KK++ + +YAI+T + WHE+SLIWET RPYLYFRT + RII GG DE Sbjct: 240 LFGKKEKNTTVETSYAIVTNEIDQFEGWHERSLIWETERPYLYFRTYRN-RIIVGGLDEA 298 Query: 300 LPDPGQXXXXXXXXXXXXXXXXXXXFPEIKGAAAEFAWGGVFGTSHDGLPFIGPHPEYPH 359 + FP+ K A++ W FG +HDGLP + + + Sbjct: 299 MQIQTIGDTKLLHKRDILINIVKEMFPQYKNIQADYYWAAAFGGTHDGLPILKEDEKIHN 358 Query: 360 CYFIEGYGGNGTVYSMLAAELLADTLAGISRPELELFS 397 ++ YGGNGTVY M+ A+L R + LF+ Sbjct: 359 LFYALPYGGNGTVYGMVFAKLFEQLFTNKEREDFSLFN 396 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,582,221,886 Number of extensions: 108796430 Number of successful extensions: 257962 Number of sequences better than 1.0e-05: 1156 Number of HSP's gapped: 256582 Number of HSP's successfully gapped: 1156 Length of query: 429 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 290 Effective length of database: 1,751,175,118 Effective search space: 507840784220 Effective search space used: 507840784220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)