BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0082.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7C7.1 B1D7C7_9BACL Coat F domain protein                            78   3e-13
B3KB45.1 B3KB45_9BACI Coat F domain protein                            76   1e-12

>B1D7C7.1 B1D7C7_9BACL Coat F domain protein
          Length = 128

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 46/73 (63%)

Query: 1  MADEDLLTMILDDLKRTVREYTTAATESNCQTVRRAFTDLTLDTLRIQGDLYNQMSQMGF 60
          + DEDL   +L DLKR VREY TAATES+C  VR+ FT L   TL++QG+L+  M     
Sbjct: 8  LPDEDLAYTVLSDLKRVVREYATAATESSCPEVRQMFTHLLNSTLKLQGNLFQVMQSQNM 67

Query: 61 YKAPDKALRQAVD 73
          Y     ALRQ +D
Sbjct: 68 YNTASSALRQEID 80


>B3KB45.1 B3KB45_9BACI Coat F domain protein
          Length = 128

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 62/119 (52%)

Query: 1   MADEDLLTMILDDLKRTVREYTTAATESNCQTVRRAFTDLTLDTLRIQGDLYNQMSQMGF 60
           + +EDLL+ IL +LKR VREYTTA TE+ C  VR+ FT+LT DTL +QG+ +N M Q   
Sbjct: 10  LPEEDLLSPILGELKRAVREYTTATTEATCPDVRQMFTNLTTDTLSLQGEFFNMMKQQNM 69

Query: 61  YKAPDKALRQAVDXXXXXXXXXXXXXXXXXXXXMNGTGDYRQAPNVPQHQPNVHSSYYM 119
           Y A   AL+  VD                     +  G Y   PNV  H  NV  + YM
Sbjct: 70  YTAGTHALKYDVDKQHKQAQQSVQKTRETINQKTSSMGAYAHNPNVEPHATNVSPASYM 128


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 568,791,515
Number of extensions: 14586796
Number of successful extensions: 31186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 31185
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)