BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0079.p
         (85 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB48.1 B3KB48_9BACI Putative uncharacterized protein                 75   2e-12

>B3KB48.1 B3KB48_9BACI Putative uncharacterized protein
          Length = 87

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 6  ADYYLPSFGGECLTGSGKRPPKGDVNA-----RRLSLEDEILTLRSRMEQLFVQENSFTS 60
           DY L ++ G+  T       K  + +     + ++LEDEI  LR +MEQ+F++E SFTS
Sbjct: 3  CDYELSNYRGD-YTAEDNNHGKWSIKSAKSTPQEITLEDEIHMLRRKMEQIFLEEQSFTS 61

Query: 61 AKVIEISSLLDLKINEYMKGHSRRR 85
            VIEISSLLDLKINEYMK H +++
Sbjct: 62 EIVIEISSLLDLKINEYMKAHPKKK 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 466,833,520
Number of extensions: 14433824
Number of successful extensions: 37524
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 37524
Number of HSP's successfully gapped: 1
Length of query: 85
Length of database: 3,060,696,203
Length adjustment: 55
Effective length of query: 30
Effective length of database: 2,542,540,378
Effective search space: 76276211340
Effective search space used: 76276211340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)