BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0078.p (142 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE41.1 B1DE41_9BACL Transcriptional regulator, MarR family 183 6e-45 C0ZGX9.1 C0ZGX9_BREBN Putative transcriptional regulator 182 1e-44 Q97G83.1 Q97G83_CLOAB Transcriptional regulator, MarR/EmrR family 158 1e-37 B9DWP9.1 B9DWP9_CLOK1 Putative uncharacterized protein 155 8e-37 A5N2Z9.1 A5N2Z9_CLOK5 Transcriptional regulator 155 8e-37 >B1DE41.1 B1DE41_9BACL Transcriptional regulator, MarR family Length = 144 Score = 183 bits (464), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 87/140 (62%), Positives = 118/140 (84%) Query: 1 MDTQQDTPYXXXXXXXXXXXKRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDR 60 M +++DTPY K+RADESI+ELGL++QQGK+I+YI+++Q+ +IQ+DL+DR Sbjct: 3 MHSRKDTPYMDLFQIIGLKLKKRADESIKELGLSSQQGKVIDYIYENQDNHIIQKDLADR 62 Query: 61 FHARGASITSILQGLEKKGYIERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIV 120 FH RGASITS+LQGLE+KG+IERKIPA+NERQKNIYVLPK VELIE F SFQ+VE EIV Sbjct: 63 FHLRGASITSMLQGLEQKGFIERKIPANNERQKNIYVLPKAVELIEGFNDSFQKVEDEIV 122 Query: 121 QPLSSDEQKLLKEMLVKINQ 140 Q L+ +E+++LK++L++IN+ Sbjct: 123 QALNDEEKQILKKLLIRINE 142 >C0ZGX9.1 C0ZGX9_BREBN Putative transcriptional regulator Length = 142 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/142 (61%), Positives = 114/142 (80%) Query: 1 MDTQQDTPYXXXXXXXXXXXKRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDR 60 M ++ TPY K++AD+SI+ELGLNAQQGK+I YI++ QE G+IQRDL+DR Sbjct: 1 MKPRKYTPYLDLFQIIGLKLKKKADDSIKELGLNAQQGKVIGYIYEKQETGLIQRDLADR 60 Query: 61 FHARGASITSILQGLEKKGYIERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIV 120 FH RGASITS+LQGLE++G+IERKIPA+NERQKNIYVLPK VELIE+F SFQ+VE EI Sbjct: 61 FHLRGASITSMLQGLEQRGFIERKIPANNERQKNIYVLPKAVELIEDFNESFQKVEDEIT 120 Query: 121 QPLSSDEQKLLKEMLVKINQHF 142 Q L+ +E++ LKE+L++IN+ Sbjct: 121 QVLTEEEKQTLKELLIRINERL 142 >Q97G83.1 Q97G83_CLOAB Transcriptional regulator, MarR/EmrR family Length = 145 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/137 (56%), Positives = 97/137 (70%) Query: 6 DTPYXXXXXXXXXXXKRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARG 65 DTPY K AD + ELGLN+QQG+MI YI+++QE G+IQ+DL+ F RG Sbjct: 9 DTPYSYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRG 68 Query: 66 ASITSILQGLEKKGYIERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSS 125 ASITS+LQGLEKKGYIER+IP +N RQKNIYVLPKG L+EEF F +VE I + L+ Sbjct: 69 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTK 128 Query: 126 DEQKLLKEMLVKINQHF 142 DEQK L +L+K+N+ Sbjct: 129 DEQKQLMSILIKVNRSM 145 >B9DWP9.1 B9DWP9_CLOK1 Putative uncharacterized protein Length = 147 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/137 (54%), Positives = 102/137 (74%) Query: 6 DTPYXXXXXXXXXXXKRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARG 65 ++PY K ++DE+I +LGLN+QQG+MI YI++HQ++G+IQ+DL+D F RG Sbjct: 11 ESPYSDLIRRIALKIKFKSDENINKLGLNSQQGRMISYIYEHQDEGIIQKDLADVFQRRG 70 Query: 66 ASITSILQGLEKKGYIERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSS 125 ASITS+LQGLE+KGYI+R IP +ERQKNIYVL KG ELIEEF R F QVE I + L+ Sbjct: 71 ASITSMLQGLERKGYIQRSIPKDDERQKNIYVLQKGAELIEEFNRIFFQVEKSITENLTD 130 Query: 126 DEQKLLKEMLVKINQHF 142 E++ L +L+K+N++ Sbjct: 131 GEKECLLSLLIKVNKNL 147 >A5N2Z9.1 A5N2Z9_CLOK5 Transcriptional regulator Length = 145 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/137 (54%), Positives = 102/137 (74%) Query: 6 DTPYXXXXXXXXXXXKRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARG 65 ++PY K ++DE+I +LGLN+QQG+MI YI++HQ++G+IQ+DL+D F RG Sbjct: 9 ESPYSDLIRRIALKIKFKSDENINKLGLNSQQGRMISYIYEHQDEGIIQKDLADVFQRRG 68 Query: 66 ASITSILQGLEKKGYIERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSS 125 ASITS+LQGLE+KGYI+R IP +ERQKNIYVL KG ELIEEF R F QVE I + L+ Sbjct: 69 ASITSMLQGLERKGYIQRSIPKDDERQKNIYVLQKGAELIEEFNRIFFQVEKSITENLTD 128 Query: 126 DEQKLLKEMLVKINQHF 142 E++ L +L+K+N++ Sbjct: 129 GEKECLLSLLIKVNKNL 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 683,505,690 Number of extensions: 24970873 Number of successful extensions: 98280 Number of sequences better than 1.0e-05: 147 Number of HSP's gapped: 98705 Number of HSP's successfully gapped: 147 Length of query: 142 Length of database: 3,060,696,203 Length adjustment: 105 Effective length of query: 37 Effective length of database: 2,071,489,628 Effective search space: 76645116236 Effective search space used: 76645116236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)