BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0074.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PRK1.1 C1PRK1_ALIAC Methylase involved in ubiquinone/menaquino... 211 7e-53 C0GKK0.1 C0GKK0_9FIRM Methyltransferase type 11 185 4e-45 C0DDD2.1 C0DDD2_NEIMU Putative uncharacterized protein 160 1e-37 C4GK47.1 C4GK47_9NEIS Putative uncharacterized protein 147 7e-34 A3CPE5.1 A3CPE5_STRSV Phosphatidylethanolamine N-methyltransfera... 147 1e-33 >C1PRK1.1 C1PRK1_ALIAC Methylase involved in ubiquinone/menaquinone biosynthesis Length = 268 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 111/256 (43%), Positives = 164/256 (64%), Gaps = 7/256 (2%) Query: 9 MLRDPGTFDRLELT--PAGAVNPV-NGQCYPWEHGFFVFLNEADTEGSNKKYLEMYNKIA 65 +L DP + LE P A+ + NG YP HG +F +A G+N Y ++Y++IA Sbjct: 8 LLCDPVHGEPLEFVAYPRPALRSIANGSEYPMVHGIPIFAAQAAVVGANAHYQKLYDRIA 67 Query: 66 RFYRLSNKAYFALKFGGERNYRRQFLSMLELRDGDRVLETSVGSADNFPYID---AKAEF 122 Y L+N F L+ GGE+ YR L LE+R GDRV+E S G+ N +++ ++ E Sbjct: 68 LVYDLANAFSFCLRSGGEKQYRADILRELEVRHGDRVIEISCGTGRNLLFLNRSYSRLEL 127 Query: 123 YGLDISGGMLKQAVRNLRRWRLKAELFQGQAEHLPFQDNRFDCVYHVGGINYFSDPGRAV 182 YGLD+S GML+ R RR + LFQG AE LPF+D+ FD V+HVGGIN+F+DP RA+ Sbjct: 128 YGLDLSLGMLRVCQRACRREGAEIRLFQGLAEALPFRDHTFDVVFHVGGINFFTDPARAM 187 Query: 183 LEMIRVAKSGTRLMIADETEKLVKGTYEKVPVVKGYFEKGKDLPGI-LGLIPENMLEIEY 241 EMIR+AK GT++++ DETE+ V+ TYE+VP V+ +F+ ++ I + +P+ + ++ Sbjct: 188 QEMIRIAKPGTKVVVVDETERKVRSTYERVPFVRRWFQDRREPVEIPIHAVPKMVEDVRV 247 Query: 242 REVCKGLMYCITFRKP 257 +E+ G MYC+TFRKP Sbjct: 248 QELDGGNMYCLTFRKP 263 >C0GKK0.1 C0GKK0_9FIRM Methyltransferase type 11 Length = 280 Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 148/252 (58%), Gaps = 4/252 (1%) Query: 8 DMLRDPGTFDRLELTP---AGAVNPVNGQCYPWEHGFFVFLNEADTEGSNKKYLEMYNKI 64 D+L DP T L L V + YP G FL++ G NK+Y MY+ + Sbjct: 7 DLLCDPETSSPLILQENEDGSQVLAGSNTTYPIRDGVADFLHQKPVTGINKRYQMMYDHL 66 Query: 65 ARFYRLSNKAYFALKFGGERNYRRQFLSMLELRDGDRVLETSVGSADNFPYIDAKAEFYG 124 + FY +A L E + RR++L LE++ GDRVLE SVG+ N + A +YG Sbjct: 67 SPFYNFVTRAAIRLMQADEDDVRREYLCELEIKPGDRVLEVSVGTGTNLRLLPRDARYYG 126 Query: 125 LDISGGMLKQAVRNLRRWRLKAELFQGQAEHLPFQDNRFDCVYHVGGINYFSDPGRAVLE 184 LDIS G L+Q + L++ L+AELF G AE LPF DN FD V+H+GGIN+F DP A+ E Sbjct: 127 LDISPGQLRQCKKLLKKIGLEAELFLGAAESLPFYDNSFDVVFHMGGINFFGDPDLALRE 186 Query: 185 MIRVAKSGTRLMIADETEKLVKGTYEKVPVVKGYFEKGKDLPGILGLIPENMLEIEYREV 244 M RVAK GT++++ DET++ K K+P+V+ +F+ D+ L+P+ +I+ +E+ Sbjct: 187 MYRVAKPGTKIVVVDETDRFTK-KLAKIPIVQNFFKSDSDVNVPDPLVPQKAEDIQVKEL 245 Query: 245 CKGLMYCITFRK 256 G ++ ++FRK Sbjct: 246 FDGRLWYLSFRK 257 >C0DDD2.1 C0DDD2_NEIMU Putative uncharacterized protein Length = 249 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 7/235 (2%) Query: 30 VNGQCYPWEHGFFVFLNEADTEGSNKKYLEMYNKIARFYRLSNKAYFALKFGGERN-YRR 88 + Q P + G + L+ + G N KY+ MYN++AR+Y + LK+G N RR Sbjct: 14 LQNQLPPEQDGILLCLDSDNVTGDNAKYMNMYNRLARWYDFGERWIARLKYGNSINKMRR 73 Query: 89 QFLSMLELRDGDRVLETSVGSADNFPYIDAKAEFYGLDISG-----GMLKQAVRNLRRWR 143 + LE R L S+G+ + ++ A + LD++G GML++ R+ Sbjct: 74 SLMGELEWRQDCTALYVSIGTGTDLNHLPADIDPAALDLTGADLSLGMLERCHNVWRKIA 133 Query: 144 LKAELFQGQAEHLPFQDNRFDCVYHVGGINYFSDPGRAVLEMIRVAKSGTRLMIADETEK 203 +L AE LPF DN FD V+HVGGIN+FSD +A+ EM+R+AK GT++MIADET Sbjct: 134 AGLDLVHCNAEDLPFADNMFDVVFHVGGINFFSDKQKAINEMLRIAKPGTKIMIADETTD 193 Query: 204 LVKGTYEKVPVVKGYFEKGK-DLPGILGLIPENMLEIEYREVCKGLMYCITFRKP 257 ++ Y+K + YF+ DL I IPE + E + R + YCITFRKP Sbjct: 194 FIQQQYKKSLFTRNYFQDTDFDLTQIENCIPETVQEKKTRLLWSNRFYCITFRKP 248 >C4GK47.1 C4GK47_9NEIS Putative uncharacterized protein Length = 231 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 130/220 (59%), Gaps = 11/220 (5%) Query: 45 LNEADTEGSNKKYLEMYNKIARFYRLSNKAYFA-LKFGGE-RNYRRQFLSMLELRDGDRV 102 LN AD G N KY ++Y+++A Y L + A LK+GG RR+ + +L+ ++G V Sbjct: 13 LNPADLAGDNGKYNKLYDRLAPLYNLGE--WLARLKYGGGIAKMRREMMRLLDWQNGASV 70 Query: 103 LETSVGSADNFPY----IDAKA-EFYGLDISGGMLKQAVRNLRRWRLKAELFQGQAEHLP 157 L SVG+ +F Y ++A + + G D+S GML++A +N +R RL L AE LP Sbjct: 71 LYVSVGTGTDFRYFPDTVNAGSLKIVGADLSLGMLRRAQKNWQR-RLNLSLVHCAAEDLP 129 Query: 158 FQDNRFDCVYHVGGINYFSDPGRAVLEMIRVAKSGTRLMIADETEKLVKGTYEKVPVVKG 217 F DN FD V+HVGGIN+FSD RA+ EM+RVAK T LM+ADET+ LV+ Y+K + Sbjct: 130 FADNSFDIVFHVGGINFFSDKPRALAEMLRVAKPRTNLMVADETQDLVEQQYQKSAFTQA 189 Query: 218 YFEKGK-DLPGILGLIPENMLEIEYREVCKGLMYCITFRK 256 ++ + D+ I +P N E + + G Y +TF K Sbjct: 190 AYQNARVDVSAIENALPANAAERQTHILWDGRFYALTFVK 229 >A3CPE5.1 A3CPE5_STRSV Phosphatidylethanolamine N-methyltransferase, putative EC=2.1.1.- Length = 246 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 41 FFVFLNEADTEGSNKKYLEMYNKIARFYRLSNKAYFALKFGGERN-YRRQFLSMLELRDG 99 ++ LN G N KY+ MYN++AR+Y K L G + R+ ++ +E +D Sbjct: 25 IYLALNPDYVSGDNAKYMTMYNRLARWYDFGEKWIGPLLHGKAIDKLRKDQMAEIEWKDH 84 Query: 100 DRVLETSVGSADNFPYI----DAKA-EFYGLDISGGMLKQAVRNLRRWRLKAELFQGQAE 154 VL S+G+ + YI D K+ +F G DIS GMLK+ ++ + + +LF AE Sbjct: 85 LSVLYVSIGTGQDLRYIPENIDLKSLDFVGADISIGMLKKCQKSCAK-KTNLQLFHACAE 143 Query: 155 HLPFQDNRFDCVYHVGGINYFSDPGRAVLEMIRVAKSGTRLMIADETEKLVKGTYEKVPV 214 LPF DN FD VYH+GGIN+FSD +A+ EM+RVAK GT++MI+DET V Y+K Sbjct: 144 DLPFADNSFDIVYHIGGINFFSDKAKAMQEMLRVAKPGTKIMISDETADYVDQQYKKNHF 203 Query: 215 VKGYFEKGK-DLPGILGLIPENMLEIEYREVCKGLMYCITFRK 256 K YF+ DL I IP + E E + + G Y +TFRK Sbjct: 204 SKDYFKDATVDLGEIEAAIPAGVKEKELKLLWDGKFYVLTFRK 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,581,554,388 Number of extensions: 65576265 Number of successful extensions: 141645 Number of sequences better than 1.0e-05: 567 Number of HSP's gapped: 142353 Number of HSP's successfully gapped: 567 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)