BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0073.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB49.1 B3KB49_9BACI ATP--cobalamin adenosyltransferase 252 1e-65 Q9KCH6.1 Q9KCH6_BACHD BH1595 protein 216 7e-55 C5D3J7.1 C5D3J7_9BACI ATP/cobalamin adenosyltransferase 213 9e-54 C3B1E6.1 C3B1E6_BACMY ATP:cob(I)alamin adenosyltransferase 205 2e-51 C3A3N3.1 C3A3N3_BACMY ATP:cob(I)alamin adenosyltransferase 204 4e-51 >B3KB49.1 B3KB49_9BACI ATP--cobalamin adenosyltransferase Length = 186 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/191 (64%), Positives = 145/191 (75%), Gaps = 5/191 (2%) Query: 1 MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60 M +YTRTGD GETS+IGG KDD R+EAYGTIDELNSFVGQA L ++A F ++ Sbjct: 1 MKVYTRTGDAGETSIIGGRVP-----KDDPRIEAYGTIDELNSFVGQAVCLAKEADFEEL 55 Query: 61 REQLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGG 120 QL++IQHELFDCGSDLA+ + E+K KV + + +RLE W+DA + +NP LERFILPGG Sbjct: 56 YLQLVQIQHELFDCGSDLAYARPREDKLKVGAELVDRLEAWLDAFEEKNPPLERFILPGG 115 Query: 121 SQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIAD 180 S LSS LHVCRTVCRRAER VTL R+ +IN E YLNRLSDYFF +ARAAN GI D Sbjct: 116 SALSSSLHVCRTVCRRAERLTVTLQRTTEINPEVRRYLNRLSDYFFVVARAANVHAGIPD 175 Query: 181 VEYVRSKKVFR 191 VEY RS KVFR Sbjct: 176 VEYERSGKVFR 186 >Q9KCH6.1 Q9KCH6_BACHD BH1595 protein Length = 196 Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 112/192 (58%), Positives = 137/192 (71%), Gaps = 6/192 (3%) Query: 1 MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60 M +YTRTGDKG+TSVIGG KDD RV AYGT DELNSFVG A + +++ FAD+ Sbjct: 1 MRLYTRTGDKGKTSVIGGRLA-----KDDTRVVAYGTTDELNSFVGLAITQLDENTFADI 55 Query: 61 REQLLEIQHELFDCGSDLAFVKLSENK-YKVKSGMAERLEGWIDALQAENPVLERFILPG 119 R +L +IQHELFDCG DLA +K+ E++ YK K + + LE IDA E P LERFILPG Sbjct: 56 RGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPG 115 Query: 120 GSQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIA 179 GS+ ++ LHVCRT+ RRAER V L + +IN + YLNRLSDYFFA+AR N+RL + Sbjct: 116 GSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVP 175 Query: 180 DVEYVRSKKVFR 191 DVEY RS VFR Sbjct: 176 DVEYERSAIVFR 187 >C5D3J7.1 C5D3J7_9BACI ATP/cobalamin adenosyltransferase Length = 191 Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 110/192 (57%), Positives = 135/192 (70%), Gaps = 6/192 (3%) Query: 1 MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60 M +YTRTGDKG+TS+IGG KD +RVEAYGT+DE+NSFVGQA +L+ D KF D+ Sbjct: 1 MRLYTRTGDKGKTSLIGGRVD-----KDHLRVEAYGTLDEVNSFVGQAMTLLHDEKFQDI 55 Query: 61 REQLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGG 120 +L +IQHELFDCG DLA V + YKV + M LE ID E P LE+FILPGG Sbjct: 56 YAELQKIQHELFDCGGDLAIVN-GKIPYKVTADMVTFLETRIDEYVKEAPPLEKFILPGG 114 Query: 121 SQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIAD 180 S+ ++ LHV RTV RRAER V+L + IN+ + Y+NRLSDYFFA+AR N RLG+ D Sbjct: 115 SKAAAALHVARTVTRRAERCIVSLSKEEPINEIVLQYVNRLSDYFFAVARVINARLGVKD 174 Query: 181 VEYVRSKKVFRN 192 VEY RS VFR+ Sbjct: 175 VEYERSAIVFRD 186 >C3B1E6.1 C3B1E6_BACMY ATP:cob(I)alamin adenosyltransferase Length = 190 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/192 (55%), Positives = 131/192 (68%), Gaps = 6/192 (3%) Query: 1 MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60 M +YT+TGDKG+TS+IGG KD +RVEAYGTIDE NS +G A +++++ F D+ Sbjct: 1 MKLYTKTGDKGQTSIIGGRVD-----KDHIRVEAYGTIDEANSHIGYAMTMLQEECFQDI 55 Query: 61 REQLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGG 120 E+L +IQHELFDCG DLA V+ + YKV M LEG ID E P LE FILPGG Sbjct: 56 HEELEKIQHELFDCGGDLAIVQ-QKLPYKVTEEMVIYLEGRIDHYIEEAPPLECFILPGG 114 Query: 121 SQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIAD 180 S S+V HV RTV RRAER V+LG+ +IN+ + Y+NRLSDY FA+AR N RL + D Sbjct: 115 SPASAVTHVARTVTRRAERYIVSLGKQEEINEVVLQYVNRLSDYLFAIARVINARLMVKD 174 Query: 181 VEYVRSKKVFRN 192 VEY RS VFR Sbjct: 175 VEYKRSAIVFRK 186 >C3A3N3.1 C3A3N3_BACMY ATP:cob(I)alamin adenosyltransferase Length = 193 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 107/192 (55%), Positives = 131/192 (68%), Gaps = 6/192 (3%) Query: 1 MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60 M +YT+TGDKGETSVIGG KD +RVEAYGTIDE NS +G A S +++ F ++ Sbjct: 1 MKLYTKTGDKGETSVIGGRVD-----KDHIRVEAYGTIDEANSHIGYAMSKLQEECFRNI 55 Query: 61 REQLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGG 120 +L IQHELFDCG DLA V+ + YKV M E LE ID+ E P LERFILPGG Sbjct: 56 YNELENIQHELFDCGGDLAIVE-KKIPYKVTIEMVEYLERRIDSYTEEAPPLERFILPGG 114 Query: 121 SQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIAD 180 S++S+ LH+ RTV RRAER V+L + + N+ + Y+NRLSDY FALAR N RL + D Sbjct: 115 SEISAALHIARTVIRRAERCIVSLQKEGETNEIVLKYINRLSDYLFALARVINARLQVKD 174 Query: 181 VEYVRSKKVFRN 192 VEY RS VFRN Sbjct: 175 VEYNRSALVFRN 186 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 962,026,376 Number of extensions: 33291479 Number of successful extensions: 87977 Number of sequences better than 1.0e-05: 828 Number of HSP's gapped: 85822 Number of HSP's successfully gapped: 829 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)