BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0071.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB51.1 B3KB51_9BACI Arsenate reductase and related                  187   2e-46
B1D7C2.1 B1D7C2_9BACL Arsenate reductase and related                  179   5e-44
Q65F74.1 Q65F74_BACLD YusI                                            156   6e-37
O32175.1 YUSI_BACSU Uncharacterized protein yusI                      154   2e-36
Q5WDN9.1 Q5WDN9_BACSK Arsenate reductase                              148   2e-34

>B3KB51.1 B3KB51_9BACI Arsenate reductase and related
          Length = 120

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 101/118 (85%)

Query: 1   MSHLKVYQYPKCSTCRSAVKWLKEAGHELELQHIAEQPPTVQELRVLVAKSGLELKKFFN 60
           MS LKVYQYPKC TCR+AVKWL+  GHELELQHI EQPP   EL  L+AKSGLELKKFFN
Sbjct: 1   MSKLKVYQYPKCGTCRNAVKWLQNEGHELELQHIFEQPPKKDELADLIAKSGLELKKFFN 60

Query: 61  TSGEVYKNLGLKDKLPGLSEEEQLDLLSRHGMLIKRPVVTDGKKVTVGFKEEQFSQSW 118
           TSGEVYK + LKDKLPGLS+EE+++LLS +G LIKRP+VTDG KVTVGFK EQ+ ++W
Sbjct: 61  TSGEVYKEMNLKDKLPGLSDEEKIELLSSNGRLIKRPIVTDGSKVTVGFKAEQYQEAW 118


>B1D7C2.1 B1D7C2_9BACL Arsenate reductase and related
          Length = 120

 Score =  179 bits (455), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 100/119 (84%)

Query: 1   MSHLKVYQYPKCSTCRSAVKWLKEAGHELELQHIAEQPPTVQELRVLVAKSGLELKKFFN 60
           MS L +YQYPKC TCR AVK L+  G+EL+L+HI E+ PT  EL+VLV  SGLELKKFFN
Sbjct: 1   MSKLTIYQYPKCGTCRQAVKSLQAKGNELDLKHIVEETPTPAELKVLVQNSGLELKKFFN 60

Query: 61  TSGEVYKNLGLKDKLPGLSEEEQLDLLSRHGMLIKRPVVTDGKKVTVGFKEEQFSQSWS 119
           TSGEVYK LGLKDKL  +SE+EQL+LL+ HGMLIKRP+VTDGKKVTVG+KEEQ+ Q W+
Sbjct: 61  TSGEVYKALGLKDKLGSMSEQEQLELLASHGMLIKRPIVTDGKKVTVGYKEEQYEQVWN 119


>Q65F74.1 Q65F74_BACLD YusI
          Length = 118

 Score =  156 bits (394), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 89/115 (77%)

Query: 4   LKVYQYPKCSTCRSAVKWLKEAGHELELQHIAEQPPTVQELRVLVAKSGLELKKFFNTSG 63
           L  Y YPKC TCR A KWL++ G E+   HIAEQPP+ ++L+ L  KSGLELKKFFNTSG
Sbjct: 3   LDFYWYPKCGTCRKAKKWLEDHGKEINGIHIAEQPPSKEKLKELYEKSGLELKKFFNTSG 62

Query: 64  EVYKNLGLKDKLPGLSEEEQLDLLSRHGMLIKRPVVTDGKKVTVGFKEEQFSQSW 118
           + Y+ LGLKDKL  +SE+EQL+LL+  GMLIKRP+ TDG KVTVGFKE+QF   W
Sbjct: 63  QKYRELGLKDKLQSMSEDEQLELLASDGMLIKRPITTDGSKVTVGFKEDQFKTYW 117


>O32175.1 YUSI_BACSU Uncharacterized protein yusI
          Length = 118

 Score =  154 bits (390), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 91/116 (78%)

Query: 4   LKVYQYPKCSTCRSAVKWLKEAGHELELQHIAEQPPTVQELRVLVAKSGLELKKFFNTSG 63
           L  Y YPKC TCR A KWL+E G E+   HIAEQPP+ +EL+ L  KSGL+LKKFFNTSG
Sbjct: 3   LTFYWYPKCGTCRKAKKWLEEHGKEINEIHIAEQPPSKEELKALYEKSGLDLKKFFNTSG 62

Query: 64  EVYKNLGLKDKLPGLSEEEQLDLLSRHGMLIKRPVVTDGKKVTVGFKEEQFSQSWS 119
             Y+ L LK+KL  +SE+EQL+LL+  GMLIKRP+ TDG+KVTVGFKE+QF ++W+
Sbjct: 63  MKYRELNLKEKLYHMSEDEQLELLASDGMLIKRPLTTDGEKVTVGFKEDQFEENWA 118


>Q5WDN9.1 Q5WDN9_BACSK Arsenate reductase
          Length = 120

 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 85/116 (73%)

Query: 4   LKVYQYPKCSTCRSAVKWLKEAGHELELQHIAEQPPTVQELRVLVAKSGLELKKFFNTSG 63
           + VYQYPKCSTCR+A+KWL E G   E  HI E PPT   L+ L  KSGL LK FFNTSG
Sbjct: 3   VTVYQYPKCSTCRNALKWLDEHGVSYEAIHIVEAPPTSTTLKELHQKSGLPLKAFFNTSG 62

Query: 64  EVYKNLGLKDKLPGLSEEEQLDLLSRHGMLIKRPVVTDGKKVTVGFKEEQFSQSWS 119
           + Y+ L LK+KL  +S+EEQ  LL+  GMLIKRP+VTDG KVT+GFKE+QF   WS
Sbjct: 63  KKYRELDLKNKLGEMSDEEQYQLLASSGMLIKRPIVTDGTKVTLGFKEDQFQDMWS 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 757,864,817
Number of extensions: 27619803
Number of successful extensions: 88266
Number of sequences better than 1.0e-05: 1268
Number of HSP's gapped: 88457
Number of HSP's successfully gapped: 1268
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)