BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0069.p
         (1950 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7R1.1 B1D7R1_9BACL Heparinase II/III family protein                195   5e-47
B1DD79.1 B1DD79_9BACL Metallophosphoesterase                          142   4e-31
Q5WL62.1 Q5WL62_BACSK Putative uncharacterized protein                139   4e-30
C0Z8T5.1 C0Z8T5_BREBN Putative glycerophosphoryl diester phospho...   138   7e-30
B1D6I8.1 B1D6I8_9BACL Ig domain protein group 2 domain protein        134   9e-29

>B1D7R1.1 B1D7R1_9BACL Heparinase II/III family protein
          Length = 2105

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 195/387 (50%), Gaps = 13/387 (3%)

Query: 1566 DGTVEAAVLEKAFRTSAQAEVNFASDTLELPAAALQNA-AHSGALLKVTHTEAKAGYMLP 1624
            DG V+A  L  AF+ +   EV      + LP  AL +A  +  A +K+T T     Y LP
Sbjct: 1727 DGAVDADTLRNAFKANPNVEVKANDGVVILPGTALADALINPKASIKLTSTYGT--YSLP 1784

Query: 1625 XXXXXXXXXXXXXGTGLQEMKLKVTIRKLDGXXXXXVTRAVELAGGRQMAAAVEFNLEVL 1684
                         GT + ++ +++ IRKL+      +   V   GG  +A A +FN+ + 
Sbjct: 1785 LSLLKLDDMAKQLGTEVGKLSVRINIRKLNDDESKKLNDKVNTVGGTLIADAFDFNVSIE 1844

Query: 1685 SG-GRSTPVLS-GSRYLTRSLALDSPAGSTATGIMFSPEKGTLSFVPANFTGDGTGGMLR 1742
            S  G+S P+ S GS Y+ RS+ L +     AT  +++    +L+FVP+  T +    M  
Sbjct: 1845 SADGKSIPLDSFGSTYVKRSIFLKTAPPQNATVALYASSNNSLNFVPSKMTANSAEFM-- 1902

Query: 1743 QIQSGSSILSVMTLDTSFRDLNGHWAERQAKQLADKLLLNGTGGGRFEPDRAVTRXXXXX 1802
              + G+SI +V+ +  +F D+ GHWAE+  K LA KL++ GT   +FEPDR +TR     
Sbjct: 1903 --RPGNSIYTVVEMKRNFADVVGHWAEQDIKLLAGKLIVTGTSQTKFEPDRKITR--AEF 1958

Query: 1803 XXXXXXXXXXGQGSGKAAAWPDVQPXXXXXXXXXXXXXXGLISGYGDGTLRPDAKVTRSE 1862
                       + S     + D+Q               G+++GY DG+ RP+  ++R E
Sbjct: 1959 AALVVRSLGLSESSISETGFKDIQGSEWYAKAVETAVEAGIVNGYNDGSFRPNQTISRQE 2018

Query: 1863 QAVMLARALRYIGQDGAAGGTAAESRPALELFKDAAGIAWGREEWTMVIQAGLMNGVSQE 1922
             AVM+ RA+ Y G       TA E    L  FKD + + W R++    +  G++NG S +
Sbjct: 2019 LAVMVVRAIHYAGITTTI--TAEEQTVWLSKFKDQSEVTWARKDLAEALSLGILNGRSTD 2076

Query: 1923 RLMPGMSATRAQSAVLLQRFLSLAGFI 1949
            R+    SATRA+SAV+L+R L+ +GF+
Sbjct: 2077 RIGASESATRAESAVMLRRLLTKSGFV 2103


>B1DD79.1 B1DD79_9BACL Metallophosphoesterase
          Length = 2168

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 168/359 (46%), Gaps = 18/359 (5%)

Query: 1594 ELPAAALQNAAHSGALLKVTHTEAKAGYMLPXXXXXXXXXXXXXGTGLQEMKLKVTIRKL 1653
            ELPA  L +A      L ++     A Y LP             GT   +  + + I + 
Sbjct: 1825 ELPARVLLDALKQAPNLTISVVMGNASYDLPIRALNLPTTI---GT---DASIVIKINQA 1878

Query: 1654 DGXXXXXVTRAVELAGGRQMAAAVEFNLEVLSGGRSTPVLS-GSRYLTRSLALDSPA-GS 1711
            D      +      AG + +   VEF++ + + G +  +   G  Y++R+L ++     S
Sbjct: 1879 DSTLSGTMKDKAAKAGVKLIGTPVEFSVILQANGNTKEIHDFGKTYVSRTLDINQTLDAS 1938

Query: 1712 TATGIMFSPEKGTLSFVPANFTGDGTGGMLRQIQSGSSILSVMTLDTSFRDLNGHWAERQ 1771
             +T +M++   G  +FVPA F       ++   ++G+SI +V  L+ +F DL+ HWA+  
Sbjct: 1939 HSTAVMYNEATGAFTFVPATFKKVNGHTIVTIQRNGNSIYAVAQLNKTFSDLSKHWAKAD 1998

Query: 1772 AKQLADKLLLNGTGGGRFEPDRAVTRXXXXXXXXXXXXXXXGQGSGKAAAWPDVQPXXXX 1831
             + +A KL++ GT   +F P+  VTR                Q    AA++ DV      
Sbjct: 1999 IELMASKLIVKGTSNTKFAPNAVVTRAEFAAMVVRALGISEDQA---AASFKDVSSKNWF 2055

Query: 1832 XXXXXXXXXXGLISGYGDGTLRPDAKVTRSEQAVMLARALRYIGQDGAAGGTAAESRPAL 1891
                      G++ GY   + +P+A +TR E AVM++RAL + G+  A  G A++    L
Sbjct: 2056 AGAVGAAVKAGIVKGYDGNSFKPNASITREEMAVMISRALVFAGKQPA--GAASQ----L 2109

Query: 1892 ELFKDAAGI-AWGREEWTMVIQAGLMNGVSQERLMPGMSATRAQSAVLLQRFLSLAGFI 1949
             +FKD A I AW ++     ++A ++ G +     PG  ATRA++ V+L+R L    FI
Sbjct: 2110 NVFKDKASIEAWAKQAVAQAVEAKIIEGKTGGNFAPGSKATRAEATVMLKRLLEYVDFI 2168


>Q5WL62.1 Q5WL62_BACSK Putative uncharacterized protein
          Length = 1236

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 220/487 (45%), Gaps = 39/487 (8%)

Query: 908  LPAPVI-EPFIKVAEPQTQIALAPTIVTEIKQSSDLGKLAADQLPATAILHLNPELMV-I 965
            +P P I E  ++V EP+T +  +PTI+       D      D LP        P ++   
Sbjct: 576  VPRPSIKEKVLEVNEPKTALVASPTII-------DSATGMPDALPPNV-----PSILFKA 623

Query: 966  EPGTGAVIAA-----LPEVLAATGDRVIPALYVHDALTVDRLVQVLRERGLEDVFVAAEQ 1020
            E   G ++A+     L E L     +++P + +++   V  + Q+L+ +G++DVF+ + Q
Sbjct: 624  EWRNGNLVASNRGVLLEEALDTVTQKMLPMIEINEHFLVPYVHQLLKTKGIDDVFILSRQ 683

Query: 1021 GELIKRARAAYPMARGILDFTAAGNPGP--EDLLEMRRATAASGARVALLAENAATRGNT 1078
              +I+  R      RG L  + +  P    +D +   RA         L+   A +    
Sbjct: 684  ASIIEAMRTWNNEYRGALRLSGSTLPKKKRDDAI---RAIRQCQCFTILVQAEALSAEII 740

Query: 1079 AYLQKLAVMVWSEAKTPAPSGTTAGLHQLITAGVNGLVTDVPXXXXXXXXXYNRDTTLIR 1138
             Y +  A+ +W+       + +   LH+L   GV G+ T +P         Y  + +  +
Sbjct: 741  HYFRSRAITIWAYE-----ANSELALHRLAAIGVQGIETPLPEKAVATLQAYQLENSTNQ 795

Query: 1139 KVYIIGHRGMPSVSPENTIESNRLALDAGADFIENDMFLTTDGHLIITHSPVLETTTDGS 1198
            +  +I HRG+ S++PENT+ +  LA + G + +E D+ ++ DG  ++ H   ++ TTDGS
Sbjct: 796  QPLLIAHRGVCSLAPENTMPAIELAAELGIEAVEIDIMMSKDGIPVVIHDYTVDRTTDGS 855

Query: 1199 GPVENYSLEQLKTYNANKT-------YPEGFPLVRMPTLDEQLELARSRGRLVYAEIKTQ 1251
            G V + +L QLK   AN+T         + +P  ++PTL+E L  A+ +  ++  EIKT 
Sbjct: 856  GYVRDLTLAQLKQLTANRTDNSDWVERYKLYPDAKIPTLEEVLVYAKEKELILSIEIKTD 915

Query: 1252 TPEAVDAFVRTVKEHKAEDIVNVMSFYPAQLERLNKLMPEIPA-GLLTGYIASENNVEGS 1310
              E   A    +++++ E  V +  F P  +  +    P I A  +L G           
Sbjct: 916  GLEKQVA--DLIRQYEMEPHVYLSGFNPVVMAAIQAHHPAIGAMHILAGLSPQGMTALQF 973

Query: 1311 LRDTLKTVSKLNLTFNTDYSGLGPEFMEAAKHRGLLISPWTLNKREDVIRFLKLGAFGIT 1370
               T + ++KL +        +    +  AKHRG+ +   T N +  +    K G   I 
Sbjct: 974  AEKTARHLTKLGMFSMPGDGTMTQALLSYAKHRGIPLVGGTSNSKASIQAKKKRGITMIY 1033

Query: 1371 TDYAYWA 1377
            +DY  W+
Sbjct: 1034 SDYPQWS 1040


>C0Z8T5.1 C0Z8T5_BREBN Putative glycerophosphoryl diester phosphodiesterase
            EC=3.1.4.46
          Length = 310

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 11/276 (3%)

Query: 1106 QLITAGVNGLVTDVPXXXXXXXXXYNRDTTLIRKVYIIGHRGMPSVSPENTIESNRLALD 1165
            ++I  GV G+V+  P         Y  + ++ +   ++ HRG+PS+ PENT+ +   A+ 
Sbjct: 29   EMIEMGVAGVVSHDPKEVHELLAAYP-EKSITQPPMVMAHRGIPSLKPENTMYAFEEAMK 87

Query: 1166 AGADFIENDMFLTTDGHLIITHSPVLETTTDGSGPVENYSLEQLKTYNANKTYPEGFPLV 1225
             G + IE D+  T DGHL++ H   LE TT+G+G V++++L++L+  NANK  P      
Sbjct: 88   LGVEIIETDVHKTKDGHLVLIHDFDLERTTNGTGKVKDFTLKELRELNANKLDPANPSWY 147

Query: 1226 R-------MPTLDEQLELARSRGRLVYAEIKTQTPEAVDAFVRTVKEHKAEDIVNVMSFY 1278
            +       +PT+DE LE A+ +  +V  E K    E      + +KEH   + V V SF 
Sbjct: 148  QPEITDAVIPTMDELLEAAKGKA-VVILEAKGIGYEK--EMAKVIKEHDMVEDVIVSSFS 204

Query: 1279 PAQLERLNKLMPEIPAGLLTGYIASENNVEGSLRDTLKTVSKLNLTFNTDYSGLGPEFME 1338
               LER  K  PE+  G        +  +E      +    +LN  +  ++  + PE + 
Sbjct: 205  SEVLERFAKFNPELGLGFTLSGTKPKEQLEQYAEKQITDAVQLNAQYYINHQIVTPELIR 264

Query: 1339 AAKHRGLLISPWTLNKREDVIRFLKLGAFGITTDYA 1374
             AKHRG++++ +T+N+  D+ R  + G  GI TDYA
Sbjct: 265  FAKHRGIILTVYTVNEEADMKRATEAGVGGIITDYA 300


>B1D6I8.1 B1D6I8_9BACL Ig domain protein group 2 domain protein
          Length = 1602

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 188/415 (45%), Gaps = 31/415 (7%)

Query: 1558 AVPVLEAVDGTVEAAVLEKAFRTSAQA------EVNFASDTLEL-----------PAAAL 1600
            AV ++ + DG  EAA+  K  + + QA       V F S  +EL           P++ L
Sbjct: 1197 AVTIVRSTDGVTEAAIDAKKLQDAFQALSAKPSSVKFNSVIIELKNNGGSVKVNIPSSGL 1256

Query: 1601 QNAAHSGALLKVTHTEAKAGYMLPXXXXXXXXXXXXXGTGLQEMKLKVTIRKLDGXXXXX 1660
             +     +   +        Y +P             GT L+ M L V I K+ G     
Sbjct: 1257 ADVGKDLSDASILILTDFGSYKVPVKALGLADIAQKLGTSLENMTLSVVIDKVAGSTADL 1316

Query: 1661 VTRAVELAGGRQMAAAVEFNLEVLSGGRSTPVLS-GSRYLTRSLALDSPAG-STATGIMF 1718
            +       G   +A A+++ +   + G+S  +   GS Y+ R++ +      + AT ++F
Sbjct: 1317 LAEQASKEGLTLLAPALDYKIYAQANGKSVEITGFGSTYIERTVIVPGAVNQANATALLF 1376

Query: 1719 SPEKGTLSFVPANFTGDGTGGMLRQIQSGSSILSVMTLDTS--FRDLNGHWAERQAKQLA 1776
            +P+  T +FVP+    +G        ++G+SI +V++   S  F DL GHWA+ + + LA
Sbjct: 1377 NPDTRTFTFVPSVLEDNGGSTEFVIKRNGNSIYAVVSDSGSRTFADLQGHWAKSEIELLA 1436

Query: 1777 DKLLLNGTGGGRFEPDRAVTRXXXXXXXXXXXXXXXGQGSGKAAAWPDVQPXXXXXXXXX 1836
             K ++NGT   RF PD+ +TR                   G AA + D+           
Sbjct: 1437 SKRIINGTAPDRFSPDQPITRAEFTALLVRSLGLSS---PGAAADFSDIAKRDWFADAVA 1493

Query: 1837 XXXXXGLISGYGDGTLRPDAKVTRSEQAVMLARALRYIGQDGAAGGTAAESRPALELFKD 1896
                 G+I+GY DG+ +P+ ++TR + AVM ARAL ++ +   A         AL  +KD
Sbjct: 1494 AAVHAGIINGYADGSFKPNERITREQIAVMTARALNFVNKPVQANDN------ALGNYKD 1547

Query: 1897 AAGIA-WGREEWTMVIQAGLMNGVSQERLMPGMSATRAQSAVLLQRFLSLAGFIQ 1950
             A I+ W +     ++ A ++ G S   + P  +ATRA++AV+++R L    F+ 
Sbjct: 1548 QASISPWAKASIAELLTAQIIKGKSLTTIDPAANATRAEAAVMIKRLLQFVQFMN 1602


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 10,901,537,833
Number of extensions: 464802181
Number of successful extensions: 923736
Number of sequences better than 1.0e-05: 2149
Number of HSP's gapped: 922235
Number of HSP's successfully gapped: 2163
Length of query: 1950
Length of database: 3,060,696,203
Length adjustment: 151
Effective length of query: 1799
Effective length of database: 1,638,122,938
Effective search space: 2946983165462
Effective search space used: 2946983165462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 139 (58.2 bits)