BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0067.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8T6.1 C0Z8T6_BREBN Putative uncharacterized protein 254 5e-66 Q8EMW9.1 Q8EMW9_OCEIH L-arabinose operon protein 180 1e-43 B3KJY0.1 B3KJY0_9BACI HAD-superfamily hydrolase, subfamily IIA 178 4e-43 B8GCB1.1 B8GCB1_CHLAD HAD-superfamily hydrolase, subfamily IIA 176 3e-42 Q67RC2.1 Q67RC2_SYMTH Putative uncharacterized protein 174 1e-41 >C0Z8T6.1 C0Z8T6_BREBN Putative uncharacterized protein Length = 262 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 128/257 (49%), Positives = 167/257 (64%), Gaps = 3/257 (1%) Query: 7 YETYFFDLDGTIFIGDLLLPGVRQTLQYLREQGKQVLFLSNTTIRTREECRNRLRLMGVE 66 YE YFFDLDGTIF+G+ LLPGV +TL LRE+ K+++FL+NTT++TR C+ RL+ +G+ Sbjct: 7 YEAYFFDLDGTIFLGNELLPGVEKTLATLREKQKKIMFLTNTTVQTRTACQTRLQKLGLA 66 Query: 67 ARXXXXXXXXXXXXXYFREMQGMNRRPQVLVIGEQALKYEVAGGGTVLTDEPMEATHVLV 126 A Y +E R VL++GE AL+ E+A + EATHVLV Sbjct: 67 AGREEIMTAAYAAGLYLQEYAEQAR---VLIVGEPALEEEIASFHIKQVQDAEEATHVLV 123 Query: 127 GMDRDFDYEKLHRAMKAVRAGAYLIAANPDPNCPVVGDLLPDTWAMVKAIEAASCGTVQE 186 GMDR F YEKL +A AVR GA LI ANPDP CPV G +PDTWA+ +AIE A +V Sbjct: 124 GMDRGFTYEKLQQAAYAVRKGALLIVANPDPVCPVPGGAIPDTWALARAIETAGGASVWA 183 Query: 187 IIGKPSAYYAEKVLEQSGTRRENCLMVGDRMDTDIRFGLSHGINTALVLTGVTAREDLEQ 246 + GKPS YYAE+V +Q + E C+MVGDR++TDI G + G+ TALV+TGVT +LE Sbjct: 184 MTGKPSRYYAEQVFQQLQVQPERCVMVGDRLETDILLGKNSGMKTALVMTGVTTSRELES 243 Query: 247 YSAMPDHIWTSMSEMLQ 263 PD+I +M M+Q Sbjct: 244 TEIQPDYILPTMEAMVQ 260 >Q8EMW9.1 Q8EMW9_OCEIH L-arabinose operon protein Length = 272 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/261 (34%), Positives = 156/261 (59%), Gaps = 3/261 (1%) Query: 10 YFFDLDGTIFIGDLLLPGVRQTLQYLREQGKQVLFLSNTTIRTREECRNRLRLMGVEARX 69 + FDLDGTI+I + L+PGV +T+Q L ++G +V++ +N +I + +LR +G+E + Sbjct: 5 FIFDLDGTIYIENQLIPGVFETVQQLIQRGDKVIYFTNKSIESIATYVQKLRALGIEVKN 64 Query: 70 XXXXXXXXXXXXYFREMQGMNRRPQVLVIGEQALKYEVAGGGTVLTDEPMEATHVLVGMD 129 Y + ++ + +V+VIGE L E+ G T +P+E ++V++G D Sbjct: 65 NQVVNSNYLVARYLE--KNISLQAKVMVIGENPLIEEIEKKGIKCTWDPLETSYVIIGWD 122 Query: 130 RDFDYEKLHRAMKAVRAGAYLIAANPDPNCPVVGDLLPDTWAMVKAIEAASCGTVQEIIG 189 R+F YEKL+ +A + GA +IA NPD CPV +PD AM+ A+E A+ ++ I+G Sbjct: 123 REFTYEKLNLVFQAWKKGATIIATNPDRTCPVENGEIPDCGAMIGALEGATGEKIELILG 182 Query: 190 KPSAYYAEKVLEQ-SGTRRENCLMVGDRMDTDIRFGLSHGINTALVLTGVTAREDLEQYS 248 KPS A+ + ++ E C MVGDR++TDI+ G+ G++T LVLTG+T ++ + Q Sbjct: 183 KPSVQAAQFITQELMQLPPEQCYMVGDRIETDIKMGIESGMHTVLVLTGITTKKMINQSQ 242 Query: 249 AMPDHIWTSMSEMLQDHLRLS 269 P+ + S+ +++ + L+ Sbjct: 243 YHPEFVVDSVRDIIDTIINLN 263 >B3KJY0.1 B3KJY0_9BACI HAD-superfamily hydrolase, subfamily IIA Length = 269 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 143/255 (56%), Gaps = 3/255 (1%) Query: 7 YETYFFDLDGTIFIGDLLLPGVRQTLQYLREQGKQVLFLSNTTIRTREECRNRLRLMGVE 66 + Y FDLDGTI++G + G +T+ YL+ K++LFL+N TI +RE +L +G++ Sbjct: 4 FAGYIFDLDGTIYLGAEAIDGAVETIHYLQGLDKRLLFLTNKTIDSRENYLKKLAKLGIQ 63 Query: 67 ARXXXXXXXXXXXXXYFREMQGMNRRPQVLVIGEQALKYEVAGGGTVLTDEPMEATHVLV 126 Y +Q + +V VIGE LK E+ G P E V+V Sbjct: 64 VELNHILNPALVTIHY---LQKHHPDAKVYVIGEDILKDELLDNGIRFASSPEETDVVVV 120 Query: 127 GMDRDFDYEKLHRAMKAVRAGAYLIAANPDPNCPVVGDLLPDTWAMVKAIEAASCGTVQE 186 DRDF Y L A +A++ GA +IA +PD CP+ G +PD M+ AIE + T+ Sbjct: 121 SWDRDFHYRHLDFAYQAIKGGAEVIATHPDRTCPMPGGDVPDCGGMIGAIEGTAGITITT 180 Query: 187 IIGKPSAYYAEKVLEQSGTRRENCLMVGDRMDTDIRFGLSHGINTALVLTGVTAREDLEQ 246 ++GKPS A L+ G + E+CLM GDR++TDI+ G G++TALVLTGV+ +EDL Sbjct: 181 VMGKPSVLTALTALDILGVKAEDCLMSGDRLETDIKMGNQAGMSTALVLTGVSTKEDLMD 240 Query: 247 YSAMPDHIWTSMSEM 261 S P ++ S+ ++ Sbjct: 241 SSVKPTYVLNSVHDI 255 >B8GCB1.1 B8GCB1_CHLAD HAD-superfamily hydrolase, subfamily IIA Length = 263 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 150/264 (56%), Gaps = 3/264 (1%) Query: 1 LQDVLAYETYFFDLDGTIFIGDLLLPGVRQTLQYLREQGKQVLFLSNTTIRTREECRNRL 60 +Q + Y+ Y FDLDGTI++GD+LLPGV + L LR +G++++FLSN +TR + RL Sbjct: 1 MQFIPRYDGYIFDLDGTIYLGDILLPGVAELLATLRREGRRIVFLSNNPTKTRRQYAERL 60 Query: 61 RLMGVEARXXXXXXXXXXXXXYFREMQGMNRRPQVLVIGEQALKYEVAGGGTVLTDEPME 120 R +G++A + + P + V+GE L E+ G L++ P E Sbjct: 61 RRLGIDADEHEIVNSSAVMVEWL--LANAPGAP-LFVVGEAPLIGELEAAGFPLSERPGE 117 Query: 121 ATHVLVGMDRDFDYEKLHRAMKAVRAGAYLIAANPDPNCPVVGDLLPDTWAMVKAIEAAS 180 V+ DR F Y KL A A+RAGA L+A NPD CPV G PD A++ AIEA + Sbjct: 118 IAFVVASFDRTFTYRKLQIAFDAIRAGARLVATNPDRFCPVPGGGEPDAAAIIAAIEACT 177 Query: 181 CGTVQEIIGKPSAYYAEKVLEQSGTRRENCLMVGDRMDTDIRFGLSHGINTALVLTGVTA 240 + I+GKPS A V E C++VGDR+ TDI G++ G++TALVLTG + Sbjct: 178 DTRCEVIVGKPSPIMARTVSRLINLPPERCIIVGDRLMTDIAMGITAGMDTALVLTGDSR 237 Query: 241 REDLEQYSAMPDHIWTSMSEMLQD 264 R DLE S P ++ + E++++ Sbjct: 238 RADLEHSSYRPTYVLERIDELIRE 261 >Q67RC2.1 Q67RC2_SYMTH Putative uncharacterized protein Length = 257 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 3/256 (1%) Query: 7 YETYFFDLDGTIFIGDLLLPGVRQTLQYLREQGKQVLFLSNTTIRTREECRNRLRLMGVE 66 Y Y FDLDGT+++GD +PG +TL LR +G ++ FLSN I +L +G++ Sbjct: 4 YAGYVFDLDGTLYLGDHAIPGAPETLAELRRRGARIAFLSNKPIEPAASYAAKLNRLGIQ 63 Query: 67 ARXXXXXXXXXXXXXYFREMQGMNRRPQVLVIGEQALKYEVAGGGTVLTDEPMEATHVLV 126 A Y R V +IGE+ L E+ G + +P++ +V+V Sbjct: 64 AAVEEVINSSIVMARYLSRTAPGAR---VYLIGEEPLAEELRKRGIRIVADPLDCEYVVV 120 Query: 127 GMDRDFDYEKLHRAMKAVRAGAYLIAANPDPNCPVVGDLLPDTWAMVKAIEAASCGTVQE 186 DR F Y+KL+ A++A+R GA IA +PD CPV G + D M+ A+E + V+ Sbjct: 121 SWDRQFTYQKLNDALQAIRNGARFIATHPDRTCPVPGGEVADVGGMIGAVEGVTGKKVEL 180 Query: 187 IIGKPSAYYAEKVLEQSGTRRENCLMVGDRMDTDIRFGLSHGINTALVLTGVTAREDLEQ 246 I GKPS ++ + G + C+MVGDR++TD+R G G+ TALVLTGVT RE +E Sbjct: 181 ITGKPSPITVQEAMNLLGLPPDQCIMVGDRLETDMRMGREAGMATALVLTGVTRREQVES 240 Query: 247 YSAMPDHIWTSMSEML 262 PD++ S+ ++ Sbjct: 241 SPWKPDYVLESVRGLI 256 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,489,279,442 Number of extensions: 57324492 Number of successful extensions: 138035 Number of sequences better than 1.0e-05: 1104 Number of HSP's gapped: 136083 Number of HSP's successfully gapped: 1104 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)