BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0066.p (443 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8T3.1 C0Z8T3_BREBN Probable glycerol-3-phosphate ABC transpor... 578 e-163 C0DAU3.1 C0DAU3_9CLOT Putative uncharacterized protein 447 e-124 A1V9Y2.1 A1V9Y2_DESVV Extracellular solute-binding protein, fami... 436 e-120 Q725I7.1 Q725I7_DESVH ABC transporter, periplasmic substrate-bin... 436 e-120 A8RPE5.1 A8RPE5_9CLOT Putative uncharacterized protein 429 e-118 >C0Z8T3.1 C0Z8T3_BREBN Probable glycerol-3-phosphate ABC transporter substrate binding protein Length = 438 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 261/398 (65%), Positives = 319/398 (80%) Query: 46 KTELTYYYPIAVGGPLTATIEAMTADFMKENPDIVVKPVYTGSYADTAVKTQAGVQSKQP 105 KTEL++YYP+AVGGPLT ++ M +F KENPDI VKPVYTGSY DT K QA VQ K P Sbjct: 41 KTELSFYYPVAVGGPLTKIVDGMAEEFNKENPDIKVKPVYTGSYQDTTTKVQAAVQGKTP 100 Query: 106 PDVAVLQSTELFSLLDMDAIIPLDEFIAQEGGDTYLSDFYPAFMENSQTEGKTYSIPFQR 165 PDVAV+ STEL +++DMDAI+PLD+FIA++GG Y++DF+P F+ NSQ +GKTYSIPFQR Sbjct: 101 PDVAVMLSTELHTMMDMDAILPLDDFIAKDGGSEYVNDFFPGFLANSQVDGKTYSIPFQR 160 Query: 166 STIVLYYNKDMFKAAGLDPEKPPATWAEMQEYAVKLAGNGKWGLEIPVTGYAYWMLQTFA 225 STIVLYYNKD FK GLDPEKPP +W E+ +YA KL +G++G+EIP + + YWM Q A Sbjct: 161 STIVLYYNKDAFKEVGLDPEKPPTSWDELVQYAAKLKKDGRYGVEIPSSSFTYWMFQALA 220 Query: 226 LQNGNNLMTPDGKKVMFNTPENVEGLQYWVDLAAKHKAMPGGVTDWSTVPSDFLEGKTAM 285 LQNG NLM+ DGKKV +TPENVE LQ+WVDL+ KH+ MP GV +W+TVPSDFLEGKTAM Sbjct: 221 LQNGKNLMSEDGKKVFLDTPENVEALQFWVDLSKKHQVMPEGVNEWATVPSDFLEGKTAM 280 Query: 286 MYHTTGNLTNVKKNASFDFGVSFLPAQKQYGSPTGGGNFYIFKDIDKKKQEAAWKFVKFM 345 M+HTTGNLTNVKK+A FDFGV+FLPA+K YGSPTGGGNFY+FK D+KKQ AAWKF++FM Sbjct: 281 MFHTTGNLTNVKKSAKFDFGVAFLPAKKNYGSPTGGGNFYMFKGTDEKKQAAAWKFIRFM 340 Query: 346 TETERAAQWSIDTGYVAVKKSAYETERMKAYAAEFPAALIARDQLEYASAELSTHNNGRI 405 TE++RAAQWS+DTGYVA +KSAYE E MK Y +FPAA +ARDQLEY AELSTHNNG++ Sbjct: 341 TESKRAAQWSVDTGYVATRKSAYEEETMKQYVKDFPAAAVARDQLEYGHAELSTHNNGKV 400 Query: 406 VKILSDSVQAALTNELTPAEXXXXXXXXXXXXXXSFNK 443 K+L+D++Q+ +T + PAE FNK Sbjct: 401 TKLLNDTLQSVITGQSEPAEALKKAQEEADKMLAPFNK 438 >C0DAU3.1 C0DAU3_9CLOT Putative uncharacterized protein Length = 455 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/390 (55%), Positives = 279/390 (71%), Gaps = 12/390 (3%) Query: 46 KTELTYYYPIAVGGPLTATIEAMTADFMKENPDIVVKPVYTGSYADTAVKTQAGVQSKQP 105 K ELT++YPI VGG L IE + +F KENP+IV+ PV+ G+ +T KT + +Q P Sbjct: 51 KIELTFFYPIGVGGALATLIENLATEFTKENPNIVLNPVFAGNSTETMTKTVSALQGGTP 110 Query: 106 PDVAVLQSTELFSLLDMDAIIPLDEFIAQEGGDTYLSDFYPAFMENSQTEGKTYSIPFQR 165 PD A+L + EL+SLLDMDA+IPLD+FIA++GG Y+ DF PAFM+NS +GKTYSIPFQR Sbjct: 111 PDFAILPNPELYSLLDMDAVIPLDDFIAKDGGQEYIDDFIPAFMKNSYYDGKTYSIPFQR 170 Query: 166 STIVLYYNKDMFKAAGLDPEKPPATWAEMQEYAVKL-----AGN-GKWGLEIPVTGYAYW 219 STI++YYNKD FK AGLDPEKPP W E++EYA KL +GN +WG+ IP+ + Sbjct: 171 STIIMYYNKDQFKEAGLDPEKPPTNWDELREYAKKLTVTDASGNVSRWGVMIPMDDP--F 228 Query: 220 MLQTFALQNGNN----LMTPDGKKVMFNTPENVEGLQYWVDLAAKHKAMPGGVTDWSTVP 275 M F QN ++ +M DGK V F+TPEN E LQY VDLA K MP G W P Sbjct: 229 MFYGFCRQNSSDPQSQIMAEDGKSVYFDTPENAEALQYLVDLAQVDKVMPEGSIKWGDGP 288 Query: 276 SDFLEGKTAMMYHTTGNLTNVKKNASFDFGVSFLPAQKQYGSPTGGGNFYIFKDIDKKKQ 335 S+F+ G T++ + ++G+LTN+ N F+ G +FLPA KQYGS TGG N YIFKDID+KKQ Sbjct: 289 SNFMAGATSITFTSSGSLTNILDNTDFEVGTAFLPAGKQYGSATGGANLYIFKDIDEKKQ 348 Query: 336 EAAWKFVKFMTETERAAQWSIDTGYVAVKKSAYETERMKAYAAEFPAALIARDQLEYASA 395 EAAWKF++++TE ERAAQWSIDTGYVA +KS+Y+T+RMK Y A+ P A A+DQL+YA + Sbjct: 349 EAAWKFIRWITEPERAAQWSIDTGYVATRKSSYDTDRMKDYLAKVPQAATAKDQLDYACS 408 Query: 396 ELSTHNNGRIVKILSDSVQAALTNELTPAE 425 EL HNN R+++ L V AA+T +TP E Sbjct: 409 ELRVHNNQRVLQALKQGVDAAMTGAMTPEE 438 >A1V9Y2.1 A1V9Y2_DESVV Extracellular solute-binding protein, family 1 Length = 431 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/386 (55%), Positives = 267/386 (69%), Gaps = 7/386 (1%) Query: 46 KTELTYYYPIAVGGPLTATIEAMTADFMKENPDIVVKPVYTGSYADTAVKTQAGVQSKQP 105 K LT+Y+P++VGGP+T +E MT FMKE+PDI + PVY G Y +T K ++ +P Sbjct: 29 KVNLTFYFPVSVGGPITKIVEGMTEQFMKEHPDINITPVYAGIYRETLTKALTALRGGEP 88 Query: 106 PDVAVLQSTELFSLLDMDAIIPLDEFIAQEGGDTYLSDFYPAFMENSQTEGKTYSIPFQR 165 P VAVL ST++++L+D DAI+P D + E + F+P FM NSQT GKT+ IPFQR Sbjct: 89 PHVAVLLSTDMYTLIDEDAIVPYDSIMKPEDM-AFTKAFFPGFMSNSQTGGKTWGIPFQR 147 Query: 166 STIVLYYNKDMFKAAGLDPEKPPATWAEMQEYAVKLA---GNGK---WGLEIPVTGYAYW 219 STIV+Y+NK+ FKAAGLDP+K PA W E+ KL +GK WG+ IP TGYAYW Sbjct: 148 STIVMYWNKEAFKAAGLDPDKAPANWQELVAMGKKLTVKDESGKVTQWGVAIPSTGYAYW 207 Query: 220 MLQTFALQNGNNLMTPDGKKVMFNTPENVEGLQYWVDLAAKHKAMPGGVTDWSTVPSDFL 279 MLQ A+QNG LM +G K F+ P+ +E L + VDLA KH P G DW+T P DF Sbjct: 208 MLQALAIQNGVELMNAEGTKTYFDDPKAIEALTFLVDLAGKHGVSPSGTIDWATTPRDFF 267 Query: 280 EGKTAMMYHTTGNLTNVKKNASFDFGVSFLPAQKQYGSPTGGGNFYIFKDIDKKKQEAAW 339 E KTA+M+ TTGNLTNV+KNA F FGV LPA + GSPTGGGNFYIFK +++AA Sbjct: 268 ERKTAIMWTTTGNLTNVRKNAQFPFGVGMLPANTRPGSPTGGGNFYIFKKSTPAERQAAV 327 Query: 340 KFVKFMTETERAAQWSIDTGYVAVKKSAYETERMKAYAAEFPAALIARDQLEYASAELST 399 FVK+MT ERAAQW IDTGYVAV+ A+ET+ MK Y A FP A IARDQL + AELST Sbjct: 328 TFVKWMTSAERAAQWGIDTGYVAVRPDAWETKAMKDYVASFPYAAIARDQLAHGVAELST 387 Query: 400 HNNGRIVKILSDSVQAALTNELTPAE 425 H+N R+ K L D++QAA+T TPAE Sbjct: 388 HDNQRVTKALDDAIQAAVTGSKTPAE 413 >Q725I7.1 Q725I7_DESVH ABC transporter, periplasmic substrate-binding protein Length = 431 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/386 (55%), Positives = 267/386 (69%), Gaps = 7/386 (1%) Query: 46 KTELTYYYPIAVGGPLTATIEAMTADFMKENPDIVVKPVYTGSYADTAVKTQAGVQSKQP 105 K LT+Y+P++VGGP+T +E MT FMKE+PDI + PVY G Y +T K ++ +P Sbjct: 29 KVNLTFYFPVSVGGPITKIVEGMTEQFMKEHPDINITPVYAGIYRETLTKALTALRGGEP 88 Query: 106 PDVAVLQSTELFSLLDMDAIIPLDEFIAQEGGDTYLSDFYPAFMENSQTEGKTYSIPFQR 165 P VAVL ST++++L+D DAI+P D + E + F+P FM NSQT GKT+ IPFQR Sbjct: 89 PHVAVLLSTDMYTLIDEDAIVPYDSIMKPEEM-AFTKAFFPGFMSNSQTGGKTWGIPFQR 147 Query: 166 STIVLYYNKDMFKAAGLDPEKPPATWAEMQEYAVKLA---GNGK---WGLEIPVTGYAYW 219 STIV+Y+NK+ FKAAGLDP+K PA W E+ KL +GK WG+ IP TGYAYW Sbjct: 148 STIVMYWNKEAFKAAGLDPDKAPANWQELVAMGKKLTVKDESGKVTQWGVAIPSTGYAYW 207 Query: 220 MLQTFALQNGNNLMTPDGKKVMFNTPENVEGLQYWVDLAAKHKAMPGGVTDWSTVPSDFL 279 MLQ A+QNG LM +G K F+ P+ +E L + VDLA KH P G DW+T P DF Sbjct: 208 MLQALAIQNGVELMNAEGTKTYFDDPKAIEALTFLVDLAGKHGVSPSGTIDWATTPRDFF 267 Query: 280 EGKTAMMYHTTGNLTNVKKNASFDFGVSFLPAQKQYGSPTGGGNFYIFKDIDKKKQEAAW 339 E KTA+M+ TTGNLTNV+KNA F FGV LPA + GSPTGGGNFYIFK +++AA Sbjct: 268 ERKTAIMWTTTGNLTNVRKNAQFPFGVGMLPANTRPGSPTGGGNFYIFKKSTPAERQAAV 327 Query: 340 KFVKFMTETERAAQWSIDTGYVAVKKSAYETERMKAYAAEFPAALIARDQLEYASAELST 399 FVK+MT ERAAQW IDTGYVAV+ A+ET+ MK Y A FP A IARDQL + AELST Sbjct: 328 TFVKWMTSAERAAQWGIDTGYVAVRPDAWETKAMKDYVASFPYAAIARDQLAHGVAELST 387 Query: 400 HNNGRIVKILSDSVQAALTNELTPAE 425 H+N R+ K L D++QAA+T TPAE Sbjct: 388 HDNQRVTKALDDAIQAAVTGSKTPAE 413 >A8RPE5.1 A8RPE5_9CLOT Putative uncharacterized protein Length = 465 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/384 (52%), Positives = 266/384 (69%), Gaps = 6/384 (1%) Query: 48 ELTYYYPIAVGGPLTATIEAMTADFMKENPDIVVKPVYTGSYADTAVKTQAGVQSKQPPD 107 LT+YYP+ VGG IE + ADF ENPDI V+PVYTG+Y DT K Q +Q PPD Sbjct: 65 HLTFYYPVNVGGSAAQLIEKICADFNAENPDIFVEPVYTGNYDDTVTKIQTAMQGGTPPD 124 Query: 108 VAVLQSTELFSLLDMDAIIPLDEFIAQEG--GDTYLSDFYPAFMENSQTEGKTYSIPFQR 165 V V +T+ F++ +PLDE I +G G Y+ DF P FME+S +GK YSIPFQR Sbjct: 125 VFVSLATQRFTMASTGMAMPLDELIEADGDEGKAYIDDFLPGFMEDSYVDGKIYSIPFQR 184 Query: 166 STIVLYYNKDMFKAAGLDPEKPPATWAEMQEYAVKLAGNGKWGLEIPV-TGYAYWMLQTF 224 ST+VLYYNKD FK GLDPE PP TW E+ EY KL +G++G+ I + +G A W F Sbjct: 185 STMVLYYNKDAFKEVGLDPEAPPTTWEELAEYGQKLTNDGRYGVGIALNSGSAQWAFTGF 244 Query: 225 ALQN---GNNLMTPDGKKVMFNTPENVEGLQYWVDLAAKHKAMPGGVTDWSTVPSDFLEG 281 LQN G NLM+ DGK V FNTPENVE LQ+W+DL ++K M G+ W+ +P+ FL G Sbjct: 245 CLQNSTDGQNLMSEDGKSVYFNTPENVEALQFWLDLQNEYKCMAEGIVQWTDLPTQFLAG 304 Query: 282 KTAMMYHTTGNLTNVKKNASFDFGVSFLPAQKQYGSPTGGGNFYIFKDIDKKKQEAAWKF 341 + AM+YHTTGN+ N+ NA FDFG +FLPA K+ G+PTGGGNFYI +I + + +AAWKF Sbjct: 305 EVAMIYHTTGNMANIHDNADFDFGTAFLPAHKRVGAPTGGGNFYISSNISEDRVQAAWKF 364 Query: 342 VKFMTETERAAQWSIDTGYVAVKKSAYETERMKAYAAEFPAALIARDQLEYASAELSTHN 401 +KF T T+RAAQWS+DTGYVA ++S ++T+ +K Y AE P A +A +QL YA EL+T+N Sbjct: 365 IKFATSTDRAAQWSLDTGYVATRQSCFDTDLIKDYYAEVPQASVAYEQLPYAKPELTTYN 424 Query: 402 NGRIVKILSDSVQAALTNELTPAE 425 I ++L+D++QAA+ +++ E Sbjct: 425 AAEIWRVLNDNIQAAVVGDMSAQE 448 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.130 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,408,208,477 Number of extensions: 103122799 Number of successful extensions: 261710 Number of sequences better than 1.0e-05: 2102 Number of HSP's gapped: 258897 Number of HSP's successfully gapped: 2111 Length of query: 443 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 304 Effective length of database: 1,751,175,118 Effective search space: 532357235872 Effective search space used: 532357235872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 133 (55.8 bits)