BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0065.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8T2.1 C0Z8T2_BREBN ABC transporter permease protein 382 e-104 C4WQD3.1 C4WQD3_9RHIZ Inner membrane component of binding-protei... 286 1e-75 B6AZA9.1 B6AZA9_9RHOB Inner membrane component of binding-protei... 286 2e-75 C5BYX7.1 C5BYX7_9MICO Binding-protein-dependent transport system... 286 2e-75 A3W658.1 A3W658_9RHOB Inner membrane component of binding-protei... 279 2e-73 >C0Z8T2.1 C0Z8T2_BREBN ABC transporter permease protein Length = 295 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/292 (65%), Positives = 237/292 (81%) Query: 1 MNASLRRNGFAWXXXXXXXXXXXXXXXYPIALTLRLSLFQADLSTPEPVFTGLANYRTMF 60 + A + N +AW YP+ T LS QADL +PEP F G+ NY+ M Sbjct: 4 LRAKWKVNMYAWLLLLPSLIFLLLFTFYPVIQTFILSFHQADLGSPEPFFNGIDNYKQML 63 Query: 61 QDEVFRKVMSNNVLFALGTVPLGIALALLMAVFANKALRGRGFMRSAFFYPTLIPMIAVA 120 +DEVF KV++NN+ FA+GTVP +ALAL MA+FANKALRG+ F+R+A+FYPT++PMIAVA Sbjct: 64 EDEVFWKVLTNNIWFAIGTVPTSVALALAMALFANKALRGKSFIRTAYFYPTVVPMIAVA 123 Query: 121 NIWLFIYTPEYGFMSRLLSWFGVNDINWLGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQ 180 NIWLFIYTPEYG +S ++ WFG D+NWLG VMWAMI M+IWKEAG+FMIFYLAGLQ Sbjct: 124 NIWLFIYTPEYGALSHVMEWFGKGDMNWLGDQKNVMWAMIFMVIWKEAGYFMIFYLAGLQ 183 Query: 181 NISKELYEAAHVDGVGRFTVFRKITFPLLMPTTLFVSIVALTNAYKLVDHLMIMTRGGPN 240 NIS+ELYE+A ++G +TVFR+ITFPLLMPTT+FVSI+A TN++KLVDHL+IMT+GGP+ Sbjct: 184 NISQELYESASMEGASSWTVFRRITFPLLMPTTMFVSIIAFTNSFKLVDHLVIMTKGGPD 243 Query: 241 NASNLLLYYIYETAFSYWDQGMASALTVVMIAVLLLIAAVQFFGLDRRIHYN 292 NASNLLLYYIYETAFS+WDQGMASALT+VM+ +LLL+AA QFFG+D++IHYN Sbjct: 244 NASNLLLYYIYETAFSFWDQGMASALTIVMVVLLLLVAAFQFFGMDKKIHYN 295 >C4WQD3.1 C4WQD3_9RHIZ Inner membrane component of binding-protein-dependent transport system Length = 291 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/264 (55%), Positives = 190/264 (71%) Query: 29 PIALTLRLSLFQADLSTPEPVFTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALAL 88 P +T S +Q P F G+ +Y TM D VF + NN ++ALGTVP IALA+ Sbjct: 28 PAVMTFINSFYQTPRGKRPPRFVGVDHYTTMISDPVFWAALKNNAIYALGTVPASIALAM 87 Query: 89 LMAVFANKALRGRGFMRSAFFYPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDINW 148 LMA+ N ++RGR MR +FF PT++PMIAVANIWLF YTP YG + + L FG ++ NW Sbjct: 88 LMAIIVNSSIRGRSLMRMSFFMPTVLPMIAVANIWLFFYTPGYGLIDQFLGLFGFHETNW 147 Query: 149 LGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQNISKELYEAAHVDGVGRFTVFRKITFPL 208 LG P V+ +++++ IWKEAGFFMIFYLA LQ IS L EAA ++G GR+ FR++TFPL Sbjct: 148 LGNPDTVLGSLMVLAIWKEAGFFMIFYLAALQQISPSLSEAAALEGTGRWYFFRRVTFPL 207 Query: 209 LMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALTV 268 LMPTTLFV I A+ NA++L+DH+++MTRGGP+NAS LLLYY+Y AF +WD ASALTV Sbjct: 208 LMPTTLFVLINAVINAFRLIDHVIVMTRGGPDNASTLLLYYVYNVAFRFWDTAYASALTV 267 Query: 269 VMIAVLLLIAAVQFFGLDRRIHYN 292 V++ L LIA VQF LDR++HY Sbjct: 268 VLLLALALIAFVQFGVLDRKVHYK 291 >B6AZA9.1 B6AZA9_9RHOB Inner membrane component of binding-protein-dependent transport system Length = 297 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/292 (47%), Positives = 197/292 (67%), Gaps = 1/292 (0%) Query: 2 NASLRRNG-FAWXXXXXXXXXXXXXXXYPIALTLRLSLFQADLSTPEPVFTGLANYRTMF 60 N RR + W YP TL S F F G+ NY+ +F Sbjct: 6 NLERRRQAIYGWLLLSPAAVLLTVFAFYPSIATLWSSTFSRGTRRKPTEFVGIENYKDLF 65 Query: 61 QDEVFRKVMSNNVLFALGTVPLGIALALLMAVFANKALRGRGFMRSAFFYPTLIPMIAVA 120 D +F +V+ NN+ +A T+P+ I +AL MA++AN + RGF+R+A+F PT++PMIA A Sbjct: 66 ADPIFWQVVKNNLFYAGITIPVSIGIALAMALWANSKISARGFVRTAYFTPTVLPMIAAA 125 Query: 121 NIWLFIYTPEYGFMSRLLSWFGVNDINWLGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQ 180 N+WLF YTP G + ++ S FG+ +NWLG P +WA+I++ IWKEAGFFMIFYLA LQ Sbjct: 126 NLWLFFYTPGLGVLDQIGSVFGLPSVNWLGQPETALWAIIIVTIWKEAGFFMIFYLAALQ 185 Query: 181 NISKELYEAAHVDGVGRFTVFRKITFPLLMPTTLFVSIVALTNAYKLVDHLMIMTRGGPN 240 I ++L EAA ++G R+T R+I PLLMPTTLF+++ A+ N+ KL+DHL I+T+GGP+ Sbjct: 186 TIPEDLKEAADIEGTSRWTYTRRIVLPLLMPTTLFIAVNAMINSVKLIDHLFILTKGGPS 245 Query: 241 NASNLLLYYIYETAFSYWDQGMASALTVVMIAVLLLIAAVQFFGLDRRIHYN 292 +AS L+LYYI+E AF+++D A+A+T+++IAVL L+AAVQFF LD+R HY Sbjct: 246 DASKLILYYIWEMAFAFFDAPHAAAMTILVIAVLGLVAAVQFFYLDKRTHYQ 297 >C5BYX7.1 C5BYX7_9MICO Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/291 (51%), Positives = 201/291 (69%), Gaps = 6/291 (2%) Query: 2 NASLRRNGFAWXXXXXXXXXXXXXXXYPIALTLRLSLFQADLSTPEPVFTGLANYRTMFQ 61 A R FAW YP+ ++ S + G ANY M Sbjct: 21 TARARDTAFAWALLAPAFLVLVAFTHYPVISSVLASTEERGGDR------GFANYERMIN 74 Query: 62 DEVFRKVMSNNVLFALGTVPLGIALALLMAVFANKALRGRGFMRSAFFYPTLIPMIAVAN 121 D VF KV+ NN+ FALGTVP +ALA+LMAV+ N L+GRGF+R A+F PT++PM+AVA+ Sbjct: 75 DPVFWKVVVNNIWFALGTVPTSMALAILMAVWVNGKLKGRGFVRLAYFTPTILPMVAVAS 134 Query: 122 IWLFIYTPEYGFMSRLLSWFGVNDINWLGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQN 181 IWLF Y+P G + +LL+W G+ NWLG P M A+++M+IWK AGFFMIFYLAGLQ+ Sbjct: 135 IWLFFYSPGIGPIDQLLTWVGLPTRNWLGDPSTAMPALMVMMIWKLAGFFMIFYLAGLQS 194 Query: 182 ISKELYEAAHVDGVGRFTVFRKITFPLLMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNN 241 +S EL EA+ ++G R+ FR++TFPLL PTTLFV +VA+T+A+K++DHL IMT GGPNN Sbjct: 195 LSPELEEASTLEGASRWYHFRRVTFPLLAPTTLFVFVVAVTDAFKIIDHLFIMTSGGPNN 254 Query: 242 ASNLLLYYIYETAFSYWDQGMASALTVVMIAVLLLIAAVQFFGLDRRIHYN 292 A+NLLLYYIY+TAF+++D G A ALT+ ++ +L ++A VQF L+RR+HY Sbjct: 255 ATNLLLYYIYDTAFTFFDPGYAGALTLALVVILGVVAVVQFGVLERRVHYR 305 >A3W658.1 A3W658_9RHOB Inner membrane component of binding-protein-dependent transport system Length = 297 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 138/293 (47%), Positives = 196/293 (66%), Gaps = 1/293 (0%) Query: 1 MNASLRRNG-FAWXXXXXXXXXXXXXXXYPIALTLRLSLFQADLSTPEPVFTGLANYRTM 59 +N RR + W YP TL S+F D F G NY + Sbjct: 5 VNTERRRQAIYGWLMLSPAAILLATFAFYPSLATLWTSIFSRDTRRKPSEFVGTENYTDL 64 Query: 60 FQDEVFRKVMSNNVLFALGTVPLGIALALLMAVFANKALRGRGFMRSAFFYPTLIPMIAV 119 F D F KV++NN+++A T+P+ IA+AL MA++AN + RGF+R+A+F PT++PMIA Sbjct: 65 FADPTFWKVVTNNLIYAGATIPISIAIALGMALWANSKIPARGFVRTAYFTPTVLPMIAA 124 Query: 120 ANIWLFIYTPEYGFMSRLLSWFGVNDINWLGTPGLVMWAMILMIIWKEAGFFMIFYLAGL 179 AN+WLF YTP G + ++ + FG+ +NWLG P +WA+I++ IWKEAGFFMIFYLA L Sbjct: 125 ANLWLFFYTPGLGVLDQIGALFGLPSVNWLGQPETALWAVIIVTIWKEAGFFMIFYLAAL 184 Query: 180 QNISKELYEAAHVDGVGRFTVFRKITFPLLMPTTLFVSIVALTNAYKLVDHLMIMTRGGP 239 Q I ++L EAA ++G RFT R+I PLLMPTTLF+ + AL N+ KL+DHL I+T+GGP Sbjct: 185 QTIPEDLKEAADIEGASRFTYTRRIVLPLLMPTTLFIMVNALINSVKLIDHLFILTKGGP 244 Query: 240 NNASNLLLYYIYETAFSYWDQGMASALTVVMIAVLLLIAAVQFFGLDRRIHYN 292 N+AS L+LYYI+E AF+++D A+A+T++++ VL L+A ++F LD+R HY Sbjct: 245 NDASKLILYYIWEMAFAFFDAPQAAAMTILVLLVLGLVAGIKFTILDKRTHYQ 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,581,282,950 Number of extensions: 62853399 Number of successful extensions: 217824 Number of sequences better than 1.0e-05: 6116 Number of HSP's gapped: 212208 Number of HSP's successfully gapped: 6128 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)