BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0064.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8T1.1 C0Z8T1_BREBN ABC transporter permease protein 313 1e-83 C3WCP0.1 C3WCP0_FUSMR Binding-protein-dependent transport system... 258 3e-67 Q725I5.1 Q725I5_DESVH ABC transporter, permease protein 227 7e-58 A1V9Y0.1 A1V9Y0_DESVV Binding-protein-dependent transport system... 227 7e-58 B8DK19.1 B8DK19_DESVM Binding-protein-dependent transport system... 223 2e-56 >C0Z8T1.1 C0Z8T1_BREBN ABC transporter permease protein Length = 267 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/264 (57%), Positives = 182/264 (68%) Query: 18 RLGNILMLALAAFWLIPLLWMTVTAFRPRHAALSGLFSLDFTLGNFATVWSAAPFATYYL 77 ++ + M LA WL PLLW T+FRPR A S FS DFTL NFA VW AAPF YY+ Sbjct: 4 KITTVGMYGLAVLWLFPLLWAVWTSFRPRELATSWSFSADFTLDNFAKVWDAAPFDQYYI 63 Query: 78 NTILIVVCVFAVQMLTXXXXXXXXXXXXXXXXXIVFLLFLVQIMIPADVLIFPNYNVLKQ 137 NT LIV + QM+T ++F+LFLVQ+M+PAD+LIFPNYNVL+ Sbjct: 64 NTFLIVTGILVAQMITATLAAYAFAKLQFWGKDVLFVLFLVQLMVPADILIFPNYNVLRD 123 Query: 138 LSLLDTKLGIMLPFLASAFGIFLLRQVFKTIPXXXXXXXXIEGSSQWQVLWKIYFPLARP 197 LSLLDTK+GIMLP+ ASAFG+FLLRQ FKTIP +EG S +Q+LW++Y PLA+P Sbjct: 124 LSLLDTKIGIMLPYFASAFGVFLLRQTFKTIPNELEEAARMEGCSWFQILWRVYVPLAKP 183 Query: 198 TYVAFALVSISYQWNNFLWPLIITNSVENRPLTVGLSIFAQSFEIGVQWTEVSXXXXXXX 257 TY+AF LVS+SY WNNF+WPLIITNSVENRPLTVGL+IFAQSFE G QW EVS Sbjct: 184 TYIAFGLVSVSYHWNNFMWPLIITNSVENRPLTVGLAIFAQSFETGAQWAEVSAATVMVI 243 Query: 258 XXXXXXXXXXQRQFIESFMHSGIK 281 QRQFI SF+HSG+K Sbjct: 244 FPLLLAFLLFQRQFINSFIHSGVK 267 >C3WCP0.1 C3WCP0_FUSMR Binding-protein-dependent transport system inner membrane component Length = 272 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/270 (48%), Positives = 170/270 (62%) Query: 12 KTKLTSRLGNILMLALAAFWLIPLLWMTVTAFRPRHAALSGLFSLDFTLGNFATVWSAAP 71 K ++ I+ +A WLIPL+WM TAF +S FTL N VW+A P Sbjct: 3 KNNTGDKIITIIGYLIAILWLIPLVWMVGTAFSEPSFKMSLFPKTAFTLDNIKYVWNAVP 62 Query: 72 FATYYLNTILIVVCVFAVQMLTXXXXXXXXXXXXXXXXXIVFLLFLVQIMIPADVLIFPN 131 F TYY+NTILIV+ F +Q+ T IVF++ +QI++P DVLI PN Sbjct: 63 FKTYYINTILIVIVTFTIQVFTSTMAAYALAVMDFKGVAIVFVIIFMQIIVPNDVLITPN 122 Query: 132 YNVLKQLSLLDTKLGIMLPFLASAFGIFLLRQVFKTIPXXXXXXXXIEGSSQWQVLWKIY 191 + VL++L +L+TKLGIMLPFL SAFGIFLLRQ FK+IP I+G++ WQ++W+IY Sbjct: 123 FMVLRELGMLNTKLGIMLPFLGSAFGIFLLRQHFKSIPKSLAEAARIDGATTWQIIWRIY 182 Query: 192 FPLARPTYVAFALVSISYQWNNFLWPLIITNSVENRPLTVGLSIFAQSFEIGVQWTEVSX 251 P A+P Y++FA+VSISY WNN+LWPLI+TNSV NR LTVGL++FA+S E +QW V Sbjct: 183 MPCAKPAYLSFAVVSISYHWNNYLWPLIVTNSVNNRTLTVGLALFAKSKEANLQWANVCA 242 Query: 252 XXXXXXXXXXXXXXXXQRQFIESFMHSGIK 281 Q+QFI+SFM SGIK Sbjct: 243 ATFIIVFPLIILFFILQKQFIDSFMSSGIK 272 >Q725I5.1 Q725I5_DESVH ABC transporter, permease protein Length = 277 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 124/279 (44%), Positives = 167/279 (59%), Gaps = 6/279 (2%) Query: 6 KEGNSMKTKLTSR-LGNILMLALAAFWLIPLLWMTVTAFRPRHAALSGLFSLD--FTLGN 62 K+ N ++ +R L LA W +PLL+ TAF P +A S F+L+ TL N Sbjct: 2 KQTNIYDSRGLARALDTTAAWTLAIMWALPLLYAIWTAFHP--SAYSTRFTLNAPLTLEN 59 Query: 63 FATVWSAAPFATYYLNTILIVVCVFAVQMLTXXXXXXXXXXXXXXXXXIVFLLFLVQIMI 122 F T W AAPFA Y++NT+L+V V A Q++ I+F L L+Q+MI Sbjct: 60 FVTAWHAAPFALYFVNTVLLVTMVLAAQLVLCTLAAYAFAKYDFRGKNIMFALVLMQLMI 119 Query: 123 PADVLIFPNYNVLKQLSLLDTKLGIMLPFLASAFGIFLLRQVFKTIPXXXXXXXXIEGSS 182 DVL+ NY + + +LD+ L I LP++ASAFGIFLLRQ FK+IP +EG+S Sbjct: 120 MPDVLVVENYRTMASIGVLDSTLAIGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGAS 179 Query: 183 QWQVLWKIYFPLARPTYVAFALVSISYQWNNFLWPLIITNSVENRPLTVGLSIFAQSFEI 242 Q+LWK+Y PL +P Y+A+ALVSISY WNNFLWPLI+TN+ +RPLTVGL +F+ S E Sbjct: 180 TLQILWKVYVPLGKPVYLAYALVSISYHWNNFLWPLIVTNTTNSRPLTVGLQVFS-STEQ 238 Query: 243 GVQWTEVSXXXXXXXXXXXXXXXXXQRQFIESFMHSGIK 281 GV W ++ QRQF++SFM +GIK Sbjct: 239 GVDWAIITAATLMTSGPLLVAFLLFQRQFVQSFMRAGIK 277 >A1V9Y0.1 A1V9Y0_DESVV Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 124/279 (44%), Positives = 167/279 (59%), Gaps = 6/279 (2%) Query: 6 KEGNSMKTKLTSR-LGNILMLALAAFWLIPLLWMTVTAFRPRHAALSGLFSLD--FTLGN 62 K+ N ++ +R L LA W +PLL+ TAF P +A S F+L+ TL N Sbjct: 2 KQTNIYDSRGLARALDTTAAWTLAIMWALPLLYAIWTAFHP--SAYSTRFTLNAPLTLEN 59 Query: 63 FATVWSAAPFATYYLNTILIVVCVFAVQMLTXXXXXXXXXXXXXXXXXIVFLLFLVQIMI 122 F T W AAPFA Y++NT+L+V V A Q++ I+F L L+Q+MI Sbjct: 60 FVTAWHAAPFALYFVNTVLLVTMVLAAQLVLCTLAAYAFAKYDFRGKNIMFALVLMQLMI 119 Query: 123 PADVLIFPNYNVLKQLSLLDTKLGIMLPFLASAFGIFLLRQVFKTIPXXXXXXXXIEGSS 182 DVL+ NY + + +LD+ L I LP++ASAFGIFLLRQ FK+IP +EG+S Sbjct: 120 MPDVLVVENYRTMASIGVLDSTLAIGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGAS 179 Query: 183 QWQVLWKIYFPLARPTYVAFALVSISYQWNNFLWPLIITNSVENRPLTVGLSIFAQSFEI 242 Q+LWK+Y PL +P Y+A+ALVSISY WNNFLWPLI+TN+ +RPLTVGL +F+ S E Sbjct: 180 TLQILWKVYVPLGKPVYLAYALVSISYHWNNFLWPLIVTNTTNSRPLTVGLQVFS-STEQ 238 Query: 243 GVQWTEVSXXXXXXXXXXXXXXXXXQRQFIESFMHSGIK 281 GV W ++ QRQF++SFM +GIK Sbjct: 239 GVDWAIITAATLMTSGPLLVAFLLFQRQFVQSFMRAGIK 277 >B8DK19.1 B8DK19_DESVM Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/255 (44%), Positives = 153/255 (60%), Gaps = 1/255 (0%) Query: 27 LAAFWLIPLLWMTVTAFRPRHAALSGLFSLDFTLGNFATVWSAAPFATYYLNTILIVVCV 86 LA W +PLL+ TAF P + + TL NF W AAPFA Y +NT+L+V V Sbjct: 24 LAVLWALPLLYAVWTAFHPSEFSTRFTLAAPLTLDNFRAAWDAAPFARYLVNTVLLVTMV 83 Query: 87 FAVQMLTXXXXXXXXXXXXXXXXXIVFLLFLVQIMIPADVLIFPNYNVLKQLSLLDTKLG 146 A Q++ I+F L L+Q+MI DVL+ NY + + +LD+ L Sbjct: 84 LAGQLVLCTLAAYAFAKYDFPGKGILFALVLMQLMIMPDVLVVENYRTMSAIGVLDSTLA 143 Query: 147 IMLPFLASAFGIFLLRQVFKTIPXXXXXXXXIEGSSQWQVLWKIYFPLARPTYVAFALVS 206 I LP++ASAFGIFLLRQ FK+IP +EG+S Q+LWK+Y PL +P Y+A+ALVS Sbjct: 144 IGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGASTLQILWKVYVPLGKPVYLAYALVS 203 Query: 207 ISYQWNNFLWPLIITNSVENRPLTVGLSIFAQSFEIGVQWTEVSXXXXXXXXXXXXXXXX 266 +SY WNNFLWPLI+TN+ +RPLTVGL +F+ S E GV W+ ++ Sbjct: 204 VSYHWNNFLWPLIVTNTTNSRPLTVGLQVFS-STEQGVDWSIITAATLMTSGPLLIGFLL 262 Query: 267 XQRQFIESFMHSGIK 281 QRQF++SFM +GIK Sbjct: 263 FQRQFVQSFMRAGIK 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.141 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,325,184,784 Number of extensions: 43920255 Number of successful extensions: 148148 Number of sequences better than 1.0e-05: 4885 Number of HSP's gapped: 143518 Number of HSP's successfully gapped: 4885 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)