BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0063.p
         (312 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z8T0.1 C0Z8T0_BREBN Putative uncharacterized protein                138   6e-31

>C0Z8T0.1 C0Z8T0_BREBN Putative uncharacterized protein
          Length = 273

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 124/286 (43%), Gaps = 27/286 (9%)

Query: 8   AVSTYVYIGRPXXXXXXXXXXXGWKHIEIMCEGRHGELLEWTADQLASLARKGEDLGIRW 67
           AVSTY                  WK IEIMCE  H +LL+W+ +QL  L ++G + GI W
Sbjct: 8   AVSTYALFDLSLRDAIVQLLQKDWKGIEIMCEENHVDLLDWSWEQLKELKQQGNERGIAW 67

Query: 68  SIHAPITGCNPXXXXXXXXXXXXXXXXXXXXXXDVLGCSYVVLHXXXXXXXXXXXXXXXX 127
           SIHAPI+GCN                         L C++VV+H                
Sbjct: 68  SIHAPISGCNLAADAGPTRDQTLDTMKRCLEIASFLDCTHVVMHAGEVEDRLAETERARG 127

Query: 128 XXXXXXXXXXXXXXXXXXXXXXXXXXKVRVVRFLQRILAE-TAGSAAVIALENVPPYPXX 186
                                        V + L  + +E +A S  ++ +ENVPPYP  
Sbjct: 128 VE--------------------------NVSQALHVLTSELSAESRTILTVENVPPYPKV 161

Query: 187 XXXXXXXXXXXAARVDSSRIGLVFDSGHALMAGKERCLLMLQQAMHRLIALHLSDNAAEQ 246
                         V+SSR+G+V+D GHA +      +  LQ+ +  L ALHLSDN  + 
Sbjct: 162 LGWSVEDLMRICRHVNSSRVGIVYDVGHAHLIRPGYAIDALQKVLPYLSALHLSDNFGKL 221

Query: 247 DEHLGLGQGKVPLEAMLAGLTAGGFRGAWVLELRHPGDLLPSAARL 292
           D+HL +G+G +P E +L+ L   GF G WV+E +  G    S  RL
Sbjct: 222 DDHLAVGEGTIPFEPILSLLKDNGFAGHWVVETKQLGCAEVSVERL 267


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,310,362,054
Number of extensions: 44136478
Number of successful extensions: 89625
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 89655
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 3,060,696,203
Length adjustment: 135
Effective length of query: 177
Effective length of database: 1,788,859,178
Effective search space: 316628074506
Effective search space used: 316628074506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)