BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0062.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB52.1 B3KB52_9BACI 5'-3' exonuclease 383 e-104 Q8EQJ7.1 Q8EQJ7_OCEIH 5'-3' exonuclease EC=3.1.11.- 371 e-101 B1D7C0.1 B1D7C0_9BACL 5'-3' exonuclease 362 2e-98 Q2B431.1 Q2B431_9BACI Putative uncharacterized protein 356 2e-96 A7GNC9.1 A7GNC9_BACCN 5'-3' exonuclease 331 5e-89 >B3KB52.1 B3KB52_9BACI 5'-3' exonuclease Length = 298 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/282 (63%), Positives = 218/282 (77%) Query: 1 MIVDGMALLFRAFYATAYGGYIRKTKAGLPTNAVYGFLQYFFDAVSTFEPSHVVCCWDMG 60 M+VDGMALLFRA+YATA GYIR+TKAG+PTNA+YGFL+Y +DA+ F+P+HV CCWDMG Sbjct: 12 MLVDGMALLFRAYYATASSGYIRRTKAGVPTNAIYGFLRYMWDAIDKFQPTHVACCWDMG 71 Query: 61 KGTFRTEKYDGYKSNRIDAPLELIPQFDLVKEVVAELGVPNIGLAGYEADDCIGTLASCY 120 TFRTE++ YK NR +AP +L+PQF LV++V LG+PN+G+ GYEADDCIGTLA + Sbjct: 72 SKTFRTEQFASYKGNRPEAPDDLVPQFSLVRDVTECLGIPNLGVVGYEADDCIGTLARRF 131 Query: 121 SGESEVYILTGDHDMLQLVSDSVKVVIMKKGRSNYKVYDPAELLEERGLTPAQVIDLKGF 180 V IL+GDHD+LQLV+DS V+IMKKG NY Y P L E+GL+P QVID+KG Sbjct: 132 GDSMNVMILSGDHDLLQLVNDSTSVIIMKKGHGNYMHYTPETLYAEKGLSPRQVIDVKGL 191 Query: 181 MGDTSDNYPGVRGIGEKTALKLLSEYGTVEGVIENLHLLPKGVRAKIEADLDMLHLSREL 240 MGDTSDNYPGVRGIGEKTA+KL+ EY +VEG++ NL L KGVR KIEADL+MLHLSR L Sbjct: 192 MGDTSDNYPGVRGIGEKTAVKLIQEYESVEGILANLDSLTKGVRTKIEADLEMLHLSRAL 251 Query: 241 AEIRCDVPVVCTLTECLWELQREKAARKFQELEFGSLLHLVG 282 AEI C+VP+ C L C + E+A K +ELE SL HL G Sbjct: 252 AEIHCEVPMECELDLCRLSVDHERALTKLEELEMKSLGHLFG 293 >Q8EQJ7.1 Q8EQJ7_OCEIH 5'-3' exonuclease EC=3.1.11.- Length = 290 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 166/277 (59%), Positives = 213/277 (76%) Query: 1 MIVDGMALLFRAFYATAYGGYIRKTKAGLPTNAVYGFLQYFFDAVSTFEPSHVVCCWDMG 60 ++VDGMALLFR F+AT++ G T G+PTN VY FL+Y D+V FEP+HV+CCWDMG Sbjct: 7 LLVDGMALLFRGFFATSFRGNFMYTSKGVPTNGVYQFLRYLMDSVQKFEPTHVICCWDMG 66 Query: 61 KGTFRTEKYDGYKSNRIDAPLELIPQFDLVKEVVAELGVPNIGLAGYEADDCIGTLASCY 120 TFRTE + GYK+NR + P ELIPQFDLVKEVV +PNIGL +EADDCIGTLA Y Sbjct: 67 SKTFRTELFAGYKANRDEPPKELIPQFDLVKEVVEAFNMPNIGLENFEADDCIGTLAHAY 126 Query: 121 SGESEVYILTGDHDMLQLVSDSVKVVIMKKGRSNYKVYDPAELLEERGLTPAQVIDLKGF 180 S E+EV +LTGD D+LQLV +++++ IM+KG+ NY+V+D E++GL+P Q+IDLKG Sbjct: 127 SLENEVTVLTGDQDLLQLVKENIRIAIMRKGQGNYEVFDQDNFYEKKGLSPKQIIDLKGL 186 Query: 181 MGDTSDNYPGVRGIGEKTALKLLSEYGTVEGVIENLHLLPKGVRAKIEADLDMLHLSREL 240 MGD+SDNYPGV+GIGEKTA+KLL EY T++ ++ N+ LPKGV+AKI A+LDMLHLSR L Sbjct: 187 MGDSSDNYPGVKGIGEKTAIKLLQEYETIDDLLNNIEKLPKGVQAKINANLDMLHLSRSL 246 Query: 241 AEIRCDVPVVCTLTECLWELQREKAARKFQELEFGSL 277 AEI+CDVP+ C+L W + E A K ELEF ++ Sbjct: 247 AEIKCDVPISCSLDTSEWNVNLETATNKLNELEFKNI 283 >B1D7C0.1 B1D7C0_9BACL 5'-3' exonuclease Length = 285 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/281 (60%), Positives = 213/281 (75%), Gaps = 3/281 (1%) Query: 1 MIVDGMALLFRAFYATAYGGYIRKTKAGLPTNAVYGFLQYFFDAVSTFEPSHVVCCWDMG 60 +IVDGMALLFRAF+A Y R+ G PTNA+YGF+QY FDAV+ F+P+HV CCWDMG Sbjct: 7 LIVDGMALLFRAFFAQQYSA--RRMADGTPTNAIYGFMQYLFDAVNQFQPTHVACCWDMG 64 Query: 61 KGTFRTEKYDGYKSNRIDAPLELIPQFDLVKEVVAELGVPNIGLAGYEADDCIGTLASCY 120 TFRTE Y YK+NR +AP +LIPQF LVK++VA LG+PNIG+ GYEADDCIGT++ Sbjct: 65 SKTFRTEMYSNYKANRPEAPDDLIPQFSLVKDIVAALGIPNIGIEGYEADDCIGTVSKQL 124 Query: 121 SGESEVYILTGDHDMLQLVSDSVKVVIMKKGRSNYKVYDPAELLEERGLTPAQVIDLKGF 180 S + VYILTGD DMLQLV + + VVIMKKGR NY VYD L E++G+ P QVI++KG Sbjct: 125 SQMAHVYILTGDQDMLQLVEERIHVVIMKKGRGNYAVYDLGFLKEDKGIHPFQVIEMKGL 184 Query: 181 MGDTSDNYPGVRGIGEKTALKLLSEYGTVEGVIENLHLLPKGVRAKIEADLDMLHLSREL 240 GDTSDNYPGV+GIGEKTALKLL E+ +++G++ NL + K ++AKIEADLDMLHLSR L Sbjct: 185 TGDTSDNYPGVKGIGEKTALKLLQEFESIDGILSNLDSVSKSIKAKIEADLDMLHLSRTL 244 Query: 241 AEIRCDVPVVCTLTECLWELQREKAARKFQELEFGSLLHLV 281 A I +VPV C+L EC+W + E A F++ SLL ++ Sbjct: 245 ARINIEVPVACSLEECVWSVPVE-AEIVFEKYRLASLLKII 284 >Q2B431.1 Q2B431_9BACI Putative uncharacterized protein Length = 300 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 165/277 (59%), Positives = 210/277 (75%) Query: 1 MIVDGMALLFRAFYATAYGGYIRKTKAGLPTNAVYGFLQYFFDAVSTFEPSHVVCCWDMG 60 ++VDGMALLFRAF+ATA G G+PTNA+ GFL++FF AVS+F+P+HV CWDMG Sbjct: 10 LLVDGMALLFRAFFATAVTGQFMINSKGVPTNAIQGFLKHFFTAVSSFKPTHVAVCWDMG 69 Query: 61 KGTFRTEKYDGYKSNRIDAPLELIPQFDLVKEVVAELGVPNIGLAGYEADDCIGTLASCY 120 TFRTE + GYK+NR +AP+EL+PQFDLVKE V + +PNIGLAG+EADDCIGT+A Sbjct: 70 SKTFRTEMFSGYKANRSEAPIELLPQFDLVKEAVEAMDIPNIGLAGFEADDCIGTIARNL 129 Query: 121 SGESEVYILTGDHDMLQLVSDSVKVVIMKKGRSNYKVYDPAELLEERGLTPAQVIDLKGF 180 E+ V ILTGD D+LQL+ + V+++KKG NY V+ EE+G+TP Q+IDLK F Sbjct: 130 QPEARVSILTGDQDILQLLDKDISVILLKKGFGNYLVHTADTFYEEKGITPRQMIDLKAF 189 Query: 181 MGDTSDNYPGVRGIGEKTALKLLSEYGTVEGVIENLHLLPKGVRAKIEADLDMLHLSREL 240 MGD SDNYPGV+GIGEKTALKLL ++ V+GVIENL L K +AKIE L+MLHLSR+L Sbjct: 190 MGDPSDNYPGVKGIGEKTALKLLQQFEHVDGVIENLDKLTKAQKAKIEEGLEMLHLSRQL 249 Query: 241 AEIRCDVPVVCTLTECLWELQREKAARKFQELEFGSL 277 AEI+CDVPV C L + ++++ ++KA KF ELE L Sbjct: 250 AEIKCDVPVQCVLDDAVYKINQQKAMEKFSELELRGL 286 >A7GNC9.1 A7GNC9_BACCN 5'-3' exonuclease Length = 288 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 151/275 (54%), Positives = 200/275 (72%) Query: 1 MIVDGMALLFRAFYATAYGGYIRKTKAGLPTNAVYGFLQYFFDAVSTFEPSHVVCCWDMG 60 ++VDGMALLFRAFYAT+ G K + G PTN ++G++++ A T EP+H+V CWDMG Sbjct: 5 LLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQTIEPTHIVTCWDMG 64 Query: 61 KGTFRTEKYDGYKSNRIDAPLELIPQFDLVKEVVAELGVPNIGLAGYEADDCIGTLASCY 120 TFRTE + YK+NR P ELIPQFDLV+E+ A+L +P IG+ GYEADDCIGTLA Y Sbjct: 65 STTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAQLSIPVIGMKGYEADDCIGTLAKKY 124 Query: 121 SGESEVYILTGDHDMLQLVSDSVKVVIMKKGRSNYKVYDPAELLEERGLTPAQVIDLKGF 180 E+EVYILTGD D+LQLV +V V++++KG NY+ Y P +++EE+G+ P Q++ K F Sbjct: 125 CSEAEVYILTGDTDLLQLVDTNVTVMLLRKGVGNYEYYTPEKIMEEKGVEPWQIVHAKAF 184 Query: 181 MGDTSDNYPGVRGIGEKTALKLLSEYGTVEGVIENLHLLPKGVRAKIEADLDMLHLSREL 240 MGDTSDNYPGV+GIGEKTA KL+ EYGTV V+EN+ L K R KIE DL+ L+LS +L Sbjct: 185 MGDTSDNYPGVKGIGEKTAYKLIQEYGTVAAVLENISSLTKAQRTKIENDLENLNLSLQL 244 Query: 241 AEIRCDVPVVCTLTECLWELQREKAARKFQELEFG 275 AEI C+VP+ C+L E + E+ K ++ +G Sbjct: 245 AEIHCEVPISCSLEESVHEIDESKMRSVCNQMNWG 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,818,045,833 Number of extensions: 77044930 Number of successful extensions: 179561 Number of sequences better than 1.0e-05: 2104 Number of HSP's gapped: 174546 Number of HSP's successfully gapped: 2105 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)