BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0060.p
         (95 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D6C0.1 B1D6C0_9BACL Putative uncharacterized protein                 65   1e-09
Q8GEE4.1 Q8GEE4_CLOCL Putative uncharacterized protein                 60   5e-08
Q5WCK7.1 Q5WCK7_BACSK Putative uncharacterized protein                 57   4e-07
B8I0N7.1 B8I0N7_CLOCE Putative uncharacterized protein                 55   3e-06

>B1D6C0.1 B1D6C0_9BACL Putative uncharacterized protein
          Length = 98

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 7  CKGCRDDYKVTEAQIARILASSMFNEGNTASDQVYAERIALCSTCPKLQDGVTCTACGCI 66
          CKGC  D +VT+ QI R++  S        +D++YA+R+A C  C  +    TC  CGC+
Sbjct: 15 CKGCSADVRVTDDQIQRLI--SKIKPDACVTDKLYAKRLAACEGCASMAYDTTCMHCGCL 72

Query: 67 IPVVARLKARGCPLPGGG---LWQ 87
          + V A+LK +GCP P      LW+
Sbjct: 73 VQVRAKLKDKGCPHPQQSVRTLWE 96


>Q8GEE4.1 Q8GEE4_CLOCL Putative uncharacterized protein
          Length = 89

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 1  MATTSACKGCRDDYKV----TEAQIARILASSMFNEGNTASDQVYAERIALCSTCPKLQD 56
          M     CKGCR +  V     EA +  I  +S F+     S +VY  R+ +C  C     
Sbjct: 1  MEKKENCKGCRANVNVDINSIEALVEEIRNNSEFD---VVSSEVYDNRLNICKECKDFVY 57

Query: 57 GVTCTACGCIIPVVARLKARGCPLPGGGLW 86
          G TC  CGC + V A LK+  CP   G LW
Sbjct: 58 GTTCNQCGCFVKVRALLKSSVCPSYKGDLW 87


>Q5WCK7.1 Q5WCK7_BACSK Putative uncharacterized protein
          Length = 87

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 1  MATTSACKGCRDDYKVTEAQIARILASSMFNEGN-TASDQVYAERIALCSTCPKLQDGVT 59
          M     CKGC    ++T +++ R++A     E    A+   Y  R++ C  C  L    T
Sbjct: 1  MMNEPPCKGCMASVRLTASELERLIAEYGERENEPLATTAEYFRRLSQCGQCSALVYETT 60

Query: 60 CTACGCIIPVVARLKARGCPLPGGGLW 86
          C   G +I  VARL+ +GCP P GG W
Sbjct: 61 CRHSGMLIQYVARLQNKGCPHPDGGKW 87


>B8I0N7.1 B8I0N7_CLOCE Putative uncharacterized protein
          Length = 84

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 7  CKGCRDDYKVT----EAQIARILASSMFNEGNTASDQVYAERIALCSTCPKLQDGVTCTA 62
          C  C  +  +T    E ++ R++ S +      A ++ Y +R+ +C++C  L DG+TC  
Sbjct: 5  CLKCHRNIHITHNDIEMEVKRVVKSGV----PLARNEQYEKRLEVCNSCKHLADGITCMI 60

Query: 63 CGCIIPVVARLKARGCPLPGGGLW 86
          CGCI+   A    R CP P G  W
Sbjct: 61 CGCIVKARAMNALRICPHPSGNKW 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 561,232,731
Number of extensions: 18365796
Number of successful extensions: 35799
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 35797
Number of HSP's successfully gapped: 4
Length of query: 95
Length of database: 3,060,696,203
Length adjustment: 64
Effective length of query: 31
Effective length of database: 2,457,751,243
Effective search space: 76190288533
Effective search space used: 76190288533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)