BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0059.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein 391 e-107 B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family 369 e-100 Q5WL11.1 Q5WL11_BACSK Transcriptional regulator 350 1e-94 B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family 348 4e-94 B3KK57.1 B3KK57_9BACI Regulatory protein ArsR 316 2e-84 >Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein Length = 313 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 175/301 (58%), Positives = 230/301 (76%) Query: 1 MKLDLTEESLPVYEXXXXXXXXXXXXXXXXQPMNVKELAAAARLSSAIMTMHVRKLEAAG 60 M+LD++ ESLPVYE + MN++ELA A LSSAIMTMH++KLE AG Sbjct: 1 MQLDISNESLPVYEALASKVRLAIIQQLTRKSMNIRELAEAVGLSSAIMTMHIKKLEKAG 60 Query: 61 LIRTHMAPGRSGLQKICTLAAEGAEIIFPAQAPAERKSHRKEIPVGLYSDFQIEPTCGLA 120 +IRT M PG++G+QK+C L + EI FP + + + H+ + VG Y+DF +EPTCGLA Sbjct: 61 IIRTEMVPGKAGIQKLCILDTDHIEINFPPKKESLKLYHQTILSVGHYTDFLVEPTCGLA 120 Query: 121 TVEKVIGNFDDPRYFWDLERMNAGILWFGKGYVEYKIPNFLLSSEQPEELVITMEIASEA 180 T EK+IG FD+PRYF D ER+NA ILWF KGY+EYKIPNFL SE P+EL I++E++SEA Sbjct: 121 TAEKIIGEFDEPRYFLDPERVNAKILWFSKGYIEYKIPNFLHHSENPKELEISLELSSEA 180 Query: 181 PSINNNWPSDITFTLNGTKLGFWTSPGDYGDSRGKYTPSWWPALTNQYGLLKQLRVTPKG 240 P N+NWPSDI+F N K+G WTSPGD+GDS GKYTP WWP + NQYGLLK +R+T +G Sbjct: 181 PFTNDNWPSDISFYFNNVKIGIWTSPGDFGDSPGKYTPDWWPKVINQYGLLKFIRITKEG 240 Query: 241 TFMDGQKLSGVTLDQVDIRSKQWTFRLSVEEDAEHIGGLTLFGKGFGNYNQDMLVELFYT 300 TF++G K+S VT+D V IRSKQW+FR++V +DAE++GG+T+FG+GFGNYNQD++ L+YT Sbjct: 241 TFIEGAKISDVTIDDVHIRSKQWSFRVAVPDDAENVGGVTIFGEGFGNYNQDIIFRLYYT 300 Query: 301 E 301 + Sbjct: 301 K 301 >B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family Length = 305 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 215/303 (70%), Gaps = 2/303 (0%) Query: 1 MKLDLTEESLPVYEXXXX--XXXXXXXXXXXXQPMNVKELAAAARLSSAIMTMHVRKLEA 58 +K D LP+YE +PMNVK+LAAA LSSAI+TMHVRKLE Sbjct: 3 IKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKLEQ 62 Query: 59 AGLIRTHMAPGRSGLQKICTLAAEGAEIIFPAQAPAERKSHRKEIPVGLYSDFQIEPTCG 118 AG+I+T M + G KIC +AA +I P +K+H IP+G Y++F++ PTCG Sbjct: 63 AGIIQTKMVRKQGGTHKICEIAASRIQIDLPQAGFIPKKTHEISIPIGHYTEFEVHPTCG 122 Query: 119 LATVEKVIGNFDDPRYFWDLERMNAGILWFGKGYVEYKIPNFLLSSEQPEELVITMEIAS 178 +AT EKVIG FDD RYF + ERMNAGILWFG+GYVEY+IPN+LL ++PEEL I +EI+S Sbjct: 123 IATTEKVIGQFDDARYFLEPERMNAGILWFGQGYVEYRIPNYLLPGQRPEELEIVLEISS 182 Query: 179 EAPSINNNWPSDITFTLNGTKLGFWTSPGDYGDSRGKYTPSWWPALTNQYGLLKQLRVTP 238 EAP N NWPSDI FTLNG ++G WTSPGDYG +GKYTPSWW NQYGLLK +RV Sbjct: 183 EAPGYNENWPSDIVFTLNGVRIGMWTSPGDYGAIKGKYTPSWWQDFVNQYGLLKIIRVQK 242 Query: 239 KGTFMDGQKLSGVTLDQVDIRSKQWTFRLSVEEDAEHIGGLTLFGKGFGNYNQDMLVELF 298 GTF+DGQ++S +DQ+ + QW FRL+VE++A H+GGLTLFGKGFGNYNQDM+ + Sbjct: 243 NGTFIDGQQISDTGIDQIGLNRNQWVFRLAVEDNAAHVGGLTLFGKGFGNYNQDMIFRVH 302 Query: 299 YTE 301 Y+E Sbjct: 303 YSE 305 >Q5WL11.1 Q5WL11_BACSK Transcriptional regulator Length = 303 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 162/300 (54%), Positives = 213/300 (71%), Gaps = 1/300 (0%) Query: 1 MKLDLTEESLPVYEXXXXXXXXXXXXXXXXQPMNVKELAAAARLSSAIMTMHVRKLEAAG 60 + LDLT++SLPVYE + MN+KELA + ++SSAIMT HV+KLE AG Sbjct: 3 LDLDLTKQSLPVYEALASRIRLNVLQLLAERSMNIKELAESQQVSSAIMTKHVQKLEKAG 62 Query: 61 LIRTHMAPGRSGLQKICTLAAEGAEIIFPAQAPA-ERKSHRKEIPVGLYSDFQIEPTCGL 119 LI T G++G+QK+C+L A+I FP + R H + VG ++DF +EPTCGL Sbjct: 63 LIDTTHVRGKAGVQKMCSLRVRHAQIAFPNKENGPTRAFHESHVSVGHFTDFYVEPTCGL 122 Query: 120 ATVEKVIGNFDDPRYFWDLERMNAGILWFGKGYVEYKIPNFLLSSEQPEELVITMEIASE 179 AT E ++G FD+PRYF D R+NA ILWF KG+VEYK+ NF+ E P+EL I+ME++SE Sbjct: 123 ATPETIVGEFDEPRYFLDPMRVNARILWFYKGFVEYKLSNFIHGGETPKELEISMELSSE 182 Query: 180 APSINNNWPSDITFTLNGTKLGFWTSPGDYGDSRGKYTPSWWPALTNQYGLLKQLRVTPK 239 AP N+NWPSD++FT NG LG+W SPGD+GD +GKYTP+WWP NQYGLLK +R+T Sbjct: 183 APFTNDNWPSDVSFTFNGVSLGYWRSPGDFGDQKGKYTPAWWPRGINQYGLLKVIRITEA 242 Query: 240 GTFMDGQKLSGVTLDQVDIRSKQWTFRLSVEEDAEHIGGLTLFGKGFGNYNQDMLVELFY 299 GTF+DG++LS V L V IR K WTFR++V E+ HIGG+TLFG FGNY+QD++ L+Y Sbjct: 243 GTFIDGKQLSDVKLADVSIREKVWTFRVAVGEEGVHIGGVTLFGSSFGNYDQDIVFRLYY 302 >B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family Length = 300 Score = 348 bits (893), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 158/299 (52%), Positives = 214/299 (71%) Query: 1 MKLDLTEESLPVYEXXXXXXXXXXXXXXXXQPMNVKELAAAARLSSAIMTMHVRKLEAAG 60 MK D++E+ LPVYE +N+K++A LSSAI+TMHV+KLEAAG Sbjct: 1 MKTDISEKWLPVYEALSSRVRIKIINILAQNSLNIKQIAEELGLSSAIVTMHVKKLEAAG 60 Query: 61 LIRTHMAPGRSGLQKICTLAAEGAEIIFPAQAPAERKSHRKEIPVGLYSDFQIEPTCGLA 120 ++ + + +QKIC L + EI FP++ R H +P+G YSDF + PTCG+A Sbjct: 61 IVHSERKSIKGAVQKICFLDVDSLEIQFPSRKAKVRSYHEFSMPIGHYSDFSVTPTCGIA 120 Query: 121 TVEKVIGNFDDPRYFWDLERMNAGILWFGKGYVEYKIPNFLLSSEQPEELVITMEIASEA 180 T EKVIG FDDPRYF D +R+NAGILWF +G+VEY+IPNFLLS +QPEEL I+ME+ SEA Sbjct: 121 TPEKVIGQFDDPRYFLDPDRVNAGILWFTEGFVEYRIPNFLLSVQQPEELEISMELGSEA 180 Query: 181 PSINNNWPSDITFTLNGTKLGFWTSPGDYGDSRGKYTPSWWPALTNQYGLLKQLRVTPKG 240 P IN+NWPSDI+F LN +G WTSPGDYG+SRGKYTP WW QYGL K +R+ G Sbjct: 181 PGINSNWPSDISFFLNERIIGQWTSPGDYGNSRGKYTPRWWSLQVGQYGLYKAIRIAQDG 240 Query: 241 TFMDGQKLSGVTLDQVDIRSKQWTFRLSVEEDAEHIGGLTLFGKGFGNYNQDMLVELFY 299 +++DG K+S TL +DIR K W+FR++V +++++GG+T+FGKGFGNY++D++ +L+Y Sbjct: 241 SYIDGIKVSDTTLSSLDIRQKYWSFRIAVLPESQNVGGVTIFGKGFGNYSRDIMFKLYY 299 >B3KK57.1 B3KK57_9BACI Regulatory protein ArsR Length = 300 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 143/299 (47%), Positives = 205/299 (68%) Query: 1 MKLDLTEESLPVYEXXXXXXXXXXXXXXXXQPMNVKELAAAARLSSAIMTMHVRKLEAAG 60 M+L++ + SL VYE MN+K+LA ++SS I+T H++KLE AG Sbjct: 1 MQLEIDKSSLVVYEALASEVRIKIIQLLSKNKMNIKDLAQELQISSPIVTKHIKKLEDAG 60 Query: 61 LIRTHMAPGRSGLQKICTLAAEGAEIIFPAQAPAERKSHRKEIPVGLYSDFQIEPTCGLA 120 +IRT PG+SG QKI L + EI FP + S+ +P+G Y+D+ ++PTCGLA Sbjct: 61 IIRTEKVPGKSGQQKISILKVDHIEINFPKKIFHSFASYEASVPIGHYTDYDLKPTCGLA 120 Query: 121 TVEKVIGNFDDPRYFWDLERMNAGILWFGKGYVEYKIPNFLLSSEQPEELVITMEIASEA 180 T ++ IG D+P+YF D +R++A ILWF +G+++Y I NFL E+ ++ I++EI+SE Sbjct: 121 TEKEFIGRVDEPKYFMDPKRVDAEILWFTEGFIQYNIANFLQKDEKLQQFEISLEISSEF 180 Query: 181 PSINNNWPSDITFTLNGTKLGFWTSPGDYGDSRGKYTPSWWPALTNQYGLLKQLRVTPKG 240 P N+ WPSDITF+LNG +LG WTSPGD+ D+RGKYTP WWP NQYGLLK +R+T G Sbjct: 181 PFSNDVWPSDITFSLNGMELGTWTSPGDFADTRGKYTPEWWPHNINQYGLLKTIRITSHG 240 Query: 241 TFMDGQKLSGVTLDQVDIRSKQWTFRLSVEEDAEHIGGLTLFGKGFGNYNQDMLVELFY 299 T++DG LS V++D ++ +WTFR+ V+EDA+H+GG TLFGK FGN+ QD+ +++Y Sbjct: 241 TYIDGDPLSTVSVDDLNSACDRWTFRIEVKEDAKHVGGATLFGKKFGNHAQDIQFKMYY 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,865,654,643 Number of extensions: 81786004 Number of successful extensions: 152868 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 152764 Number of HSP's successfully gapped: 49 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)