BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0057.p
         (100 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A0YSC4.1 A0YSC4_9CYAN Cobalt transport protein CbiN                    75   2e-12
B7KJB8.1 B7KJB8_CYAP7 Cobalt transport protein                         72   1e-11
Q8YQ90.1 CBIN_ANASP Cobalt transport protein cbiN                      72   1e-11
Q0TUP0.1 Q0TUP0_CLOP1 Cobalt transport protein                         72   1e-11
B1V168.1 B1V168_CLOPE Cobalt transport protein                         72   1e-11

>A0YSC4.1 A0YSC4_9CYAN Cobalt transport protein CbiN
          Length = 106

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 40/50 (80%), Gaps = 1/50 (2%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGLLKGRQ 90
          ITEI P Y+PWF PL ELP GE ES+LF  QAAIGAG++GY +GL KGRQ
Sbjct: 50 ITEIKPNYQPWFNPLIELPSGEIESLLFVSQAAIGAGIVGYVVGLYKGRQ 99


>B7KJB8.1 B7KJB8_CYAP7 Cobalt transport protein
          Length = 98

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 1/50 (2%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGLLKGRQ 90
          I EI P Y+PWFKP+ ELP GE ES+LF +Q +IGAG+IGY +GL KGRQ
Sbjct: 41 IGEIQPTYQPWFKPVLELPSGEIESLLFVVQGSIGAGIIGYVIGLYKGRQ 90


>Q8YQ90.1 CBIN_ANASP Cobalt transport protein cbiN
          Length = 100

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGLLKGRQGRQK 94
          I+E+ P Y+PWFKPL E P GE ES+LF+ QAA+GAG+IGY +GL KGR  +Q+
Sbjct: 44 ISEVKPGYEPWFKPLFEPPSGEVESLLFSSQAALGAGIIGYAVGLYKGRSQQQR 97


>Q0TUP0.1 Q0TUP0_CLOP1 Cobalt transport protein
          Length = 103

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 4/60 (6%)

Query: 42  ITEIDPAYKPWFKPLAE-LPGETESMLFALQAAIGAGVIGYTLGLLKGRQGRQKLNDQKN 100
           IT+ID  Y+PWF PL E   GE ES+LFALQAAIGAGVIG+ LG LK   G++K+ND+ N
Sbjct: 43  ITQIDENYEPWFSPLFEPASGEIESLLFALQAAIGAGVIGFGLGYLK---GKKKVNDEVN 99


>B1V168.1 B1V168_CLOPE Cobalt transport protein
          Length = 103

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 4/60 (6%)

Query: 42  ITEIDPAYKPWFKPLAE-LPGETESMLFALQAAIGAGVIGYTLGLLKGRQGRQKLNDQKN 100
           IT+ID  Y+PWF PL E   GE ES+LFALQAAIGAGVIG+ LG LK   G++K+ND+ N
Sbjct: 43  ITQIDENYEPWFSPLFEPASGEIESLLFALQAAIGAGVIGFGLGYLK---GKKKVNDEVN 99


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 405,574,853
Number of extensions: 11218632
Number of successful extensions: 24701
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 24578
Number of HSP's successfully gapped: 148
Length of query: 100
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 31
Effective length of database: 2,410,646,168
Effective search space: 74730031208
Effective search space used: 74730031208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)