BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0056.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4W136.1 B4W136_9CYAN Cobalt ABC transporter, permease protein CbiQ 107 1e-21 B7KJB9.1 B7KJB9_CYAP7 Cobalt ABC transporter, inner membrane sub... 99 3e-19 C0Z503.1 C0Z503_BREBN Cobalt ABC transporter permease protein 97 1e-18 A0ZKP8.1 A0ZKP8_NODSP Cobalt transport protein 95 5e-18 C5DAN1.1 C5DAN1_9BACI Cobalt ABC transporter, inner membrane sub... 92 5e-17 >B4W136.1 B4W136_9CYAN Cobalt ABC transporter, permease protein CbiQ Length = 265 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 3/241 (1%) Query: 3 KSLFAAVMFALAYVLHPALQVLITLWMMLWCLQYAKIPPRAYGQLFGTALLFYGLSLPAL 62 K LFA V+ +A + P QVLI+LW+ +W + YAKIP ++Y +L G + LF G+ LPAL Sbjct: 22 KLLFALVVLGIALMASPLTQVLISLWLAIWTIGYAKIPIQSYFKLLGVSSLFLGMGLPAL 81 Query: 63 LVELGRPAAGEAALSLPIPGT---AQFLYMTXXXXXXXXXXXXXISACLACCLFIMLTTP 119 ++ + + S + G + Y++ AC++C LF++LT P Sbjct: 82 MINMIGANQIDLVASDQLGGIQLGGLYFYLSHSGWQEVVKIFIRSLACISCLLFMLLTIP 141 Query: 120 FGELLQVLRRLRMPQIVLELMLVMYRXXXXXXXXXXXXXXXXXXXXXXXXXXSKLREAAG 179 F E++Q LRR ++P+ + +L+++MYR ++ + Sbjct: 142 FVEIVQTLRRCQLPEAIGDLLMLMYRFVFILINTVIELRLAQQARGGYRTWTLAVKSTSL 201 Query: 180 MAASLFANTMHRYYGLSQGLAARGFTGEILLPPYVRREVPRRFAFEAYAGIVLLAAAQLW 239 + + L T+ RY G +ARGFT R +R+A E G + L+ ++ Sbjct: 202 LVSQLLQRTIIRYQQFCLGFSARGFTDRFYGFNGQHRNYSQRYALEGMIGCLSLSGLDIY 261 Query: 240 M 240 + Sbjct: 262 L 262 >B7KJB9.1 B7KJB9_CYAP7 Cobalt ABC transporter, inner membrane subunit CbiQ Length = 265 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 3/240 (1%) Query: 3 KSLFAAVMFALAYVLHPALQVLITLWMMLWCLQYAKIPPRAYGQLFGTALLFYGLSLPAL 62 K +FA +F LAY+ Q+LI LW+ +W + YA IP + Y QL G F+ LSLPAL Sbjct: 22 KLIFAVFLFILAYIAPSLWQILIALWLSVWIVIYAGIPYQTYFQLQGIPFSFWLLSLPAL 81 Query: 63 LVELG---RPAAGEAALSLPIPGTAQFLYMTXXXXXXXXXXXXXISACLACCLFIMLTTP 119 + G A A + IP +LY++ A +C FI+LT P Sbjct: 82 CLSGGLKVNWADFSADVWWGIPLGDVYLYLSKQGIEQGRDILTRAIALSSCTYFILLTIP 141 Query: 120 FGELLQVLRRLRMPQIVLELMLVMYRXXXXXXXXXXXXXXXXXXXXXXXXXXSKLREAAG 179 F E+ ++ +R+ P ++LEL+ +MYR + + A Sbjct: 142 FAEITRIFQRIGFPPLILELLTLMYRFIFLLTDTVFELLNAQQARNGYRNWQASMGSLAL 201 Query: 180 MAASLFANTMHRYYGLSQGLAARGFTGEILLPPYVRREVPRRFAFEAYAGIVLLAAAQLW 239 + + L T+ Y ++ GL +RGF G++ R R+ EA AG + L A+ W Sbjct: 202 VVSQLLRRTLDNYRQITLGLTSRGFQGQLQFWHSSRYRPSLRYGIEAIAGCLFLLASLGW 261 >C0Z503.1 C0Z503_BREBN Cobalt ABC transporter permease protein Length = 265 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 94/206 (45%) Query: 34 LQYAKIPPRAYGQLFGTALLFYGLSLPALLVELGRPAAGEAALSLPIPGTAQFLYMTXXX 93 + YA+IP R Y +L F+ LPALL+E R + ++ + LY+ Sbjct: 54 VVYARIPVRIYCAFMIVSLSFFAAGLPALLIEGARAGGVQVQVAAAWDLGSYVLYVPMSS 113 Query: 94 XXXXXXXXXXISACLACCLFIMLTTPFGELLQVLRRLRMPQIVLELMLVMYRXXXXXXXX 153 A L+C F++ T PF E+LQVLRRL MP +V +L+++MYR Sbjct: 114 FSKVWILFWRTMASLSCFAFLLFTVPFAEILQVLRRLHMPVLVTDLLMIMYRFIFVLVTI 173 Query: 154 XXXXXXXXXXXXXXXXXXSKLREAAGMAASLFANTMHRYYGLSQGLAARGFTGEILLPPY 213 + LR+A + A LF M +Y L +G+AARGF + + + Sbjct: 174 SHQLWIAQRSRGGHRGFRATLRDAGVLVAQLFVRAMRKYEALHKGMAARGFGESMQVLSF 233 Query: 214 VRREVPRRFAFEAYAGIVLLAAAQLW 239 R+ +E+ AG +LL + W Sbjct: 234 HSHARSHRYEWESIAGCMLLVLLEWW 259 >A0ZKP8.1 A0ZKP8_NODSP Cobalt transport protein Length = 261 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 7/221 (3%) Query: 18 HPALQVLITLWMMLWCLQYAKIPPRAYGQLFGTALLFYGLSLPALL-----VELGRPAAG 72 HP +Q++I +W+ W + YAKIP Y +L A+LF+ S PAL+ + Sbjct: 37 HPPIQIIIAIWVSSWTVIYAKIPLTIYLKLVYIAILFWLTSFPALVINGIDINYLNLIQD 96 Query: 73 EAALSLPIPGTAQFLYMTXXXXXXXXXXXXXISACLACCLFIMLTTPFGELLQVLRRLRM 132 +A + L + ++Y++ A L+C F+MLT PF ELLQ LRR Sbjct: 97 DAIIGLNVGD--YYIYISHYGIEQGWTILTRAIASLSCLYFVMLTIPFTELLQTLRRFGF 154 Query: 133 PQIVLELMLVMYRXXXXXXXXXXXXXXXXXXXXXXXXXXSKLREAAGMAASLFANTMHRY 192 P I+ +++L+MYR ++ + + L T+ Y Sbjct: 155 PVILTDILLLMYRFIFVLLNTASEIWFAQQSRSGYRTFSIGIKSLSLLIGQLLRRTLENY 214 Query: 193 YGLSQGLAARGFTGEILLPPYVRREVPRRFAFEAYAGIVLL 233 +S LA+RGF GE + R +R+A EA G V+L Sbjct: 215 RQVSLSLASRGFNGEFKVWHPHRYNFSKRYAIEAIIGYVVL 255 >C5DAN1.1 C5DAN1_9BACI Cobalt ABC transporter, inner membrane subunit CbiQ Length = 238 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 26/235 (11%) Query: 3 KSLFAAVMFALAYVLHPALQVLITLWMMLWCLQYAKIPPRAYGQLFGTALLFYGLSLPAL 62 K +FA ++ +A + +QV++T+W+ +W + YA++ + Y + G LF +S PAL Sbjct: 22 KVIFALLLLMMAITGNWKMQVMMTIWLAIWIIGYARVSWKVYAKALGVVALFLMMSFPAL 81 Query: 63 LVELGRPAAGEAALSLPIPGTAQFLYMTXXXXXXXXXXXXXISACLACCLFIMLTTPFGE 122 LV + + + + I + F+ M+ A +C F+++TTPF E Sbjct: 82 LVSIDK------SFHVSIDRSQIFIAMSLLSRSV---------AAWSCLFFLLVTTPFPE 126 Query: 123 LLQVLRRLRMPQIVLELMLVMYRXXXXXXXXXXXXXXXXXXXXXXXXXXSKLREAAGMAA 182 +L VL+R+++P I++EL+ YR S R + Sbjct: 127 MLYVLKRMKVPSIIIELLFFTYR----FVFVFEKAAEELYVAMKARNGGSHWRHGGMLVF 182 Query: 183 SLFANTMHRYYGLSQGLAARGFTGEILLPPYVR----REVPRRFAFEAYAGIVLL 233 LF H Y L L ARG + EI+ YV E +R+ +EA GI LL Sbjct: 183 QLFQKIWHSYEALRLALWARGVSNEIV---YVHMETYNEKNKRYLWEAAIGISLL 234 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,166,380,051 Number of extensions: 38680933 Number of successful extensions: 106832 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 106823 Number of HSP's successfully gapped: 31 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 129 (54.3 bits)