BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0055.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0ZKP7.1 A0ZKP7_NODSP Cobalt transport protein ATP-binding subunit 243 1e-62 C0ZL81.1 C0ZL81_BREBN Cobalt ABC transporter ATP binding protein 243 2e-62 Q3MCA8.1 Q3MCA8_ANAVT Cobalt transport protein ATP-binding subun... 229 2e-58 Q8YQ88.1 Y3946_ANASP Putative ABC transporter ATP-binding protei... 229 2e-58 B4W135.1 B4W135_9CYAN ABC transporter, ATP-binding protein 228 4e-58 >A0ZKP7.1 A0ZKP7_NODSP Cobalt transport protein ATP-binding subunit Length = 276 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/229 (51%), Positives = 152/229 (66%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 L FE V + YP T + L LT IP K AL+G NG GK+TLFL A GL +PQ G ++ Sbjct: 6 LEFEQVDYTYPGTQQSVLNNLTLKIPSKKKCALIGQNGCGKTTLFLLANGLYKPQKGNLK 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 G P+ Y +K L LR++VGL+FQDPEQQL+ ST EDIS+GL G+P AEI R Sbjct: 66 WQGKPLKYDRKSLLELRQKVGLIFQDPEQQLVASTVEEDISYGLCNMGLPTAEIQQRVEQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L LT L +P+H LSLGQKKR ++A V+ ++PEL+LLDEPT+YLD L L+ L Sbjct: 126 ALVEFGLTELAQRPVHHLSLGQKKRVSIADVMVLKPELLLLDEPTAYLDRLHTRNLMATL 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 +IH GTT++MATHD++L YRWADW+ V+D+G G P+ +F E Sbjct: 186 KNIHASGTTILMATHDLDLVYRWADWVFVMDRGQLMLEGNPQDVFKQRE 234 >C0ZL81.1 C0ZL81_BREBN Cobalt ABC transporter ATP binding protein Length = 282 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/272 (46%), Positives = 165/272 (60%), Gaps = 2/272 (0%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 L F D+ + YP P L GL+ IP G K LLG NG GKSTLFLH G++ PQ G V Sbjct: 6 LEFIDLQYTYPGGRGPVLSGLSLWIPEGKKCVLLGRNGCGKSTLFLHGNGIIEPQQGQVL 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 G P+ Y + L + ++VGLVFQDPE QLI ST EDIS+GL +P I A+ Sbjct: 66 WKGKPLVYKRAALQEMTQKVGLVFQDPEHQLIASTVAEDISYGLCNQKLPVDVIRAKVEK 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 VL+ L L + PIH LSLGQK+R ALAGV+ MEPEL+LLDEPT+YLD LL L Sbjct: 126 VLDAFGLRELAEAPIHHLSLGQKRRLALAGVMVMEPELLLLDEPTAYLDRYQTKNLLREL 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGEXXXXXXXXXXX 266 D+IHR+GTTV+MATHDM++A+ WA+WI ++D+G AG P+ + Sbjct: 186 DAIHRQGTTVLMATHDMDIAFEWAEWICIMDEGRLVFAGDPQEALENRDMLESLHLGMPL 245 Query: 267 XXELWHSLPPRVTA--GHAAPRNAEEFKAALS 296 ++W +LP + G PR+ +E + LS Sbjct: 246 LVDVWEALPEQWKRELGGNIPRSVDELRKMLS 277 >Q3MCA8.1 Q3MCA8_ANAVT Cobalt transport protein ATP-binding subunit EC=3.6.3.30 Length = 274 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/229 (49%), Positives = 151/229 (65%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 LAFE + + YP T + L G+T IP+G + AL+G NG GK+TLF A GL +PQ G V Sbjct: 6 LAFEQIHYTYPGTQQSVLNGITLQIPQGKRCALIGRNGCGKTTLFSLANGLYKPQQGCVY 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 + Y +K L LR++VGLVFQ+PEQQL+ ST EDIS+GL G+P A+I R Sbjct: 66 WQEKALQYDRKTLIQLRQKVGLVFQNPEQQLVASTVEEDISYGLCNLGLPIADIQQRVTQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L LT L ++P+H LSLGQKKR +LA V+ + PEL+LLDEPT+YLD L+ L Sbjct: 126 ALVEFELTELAERPVHHLSLGQKKRVSLADVMVLRPELLLLDEPTAYLDRPQSRNLMAML 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 + I++ GTT++MA+HD++L Y W+DWI V+D G G PE IF+ E Sbjct: 186 NKIYQSGTTILMASHDLDLVYCWSDWIFVMDAGRLILEGKPENIFSQRE 234 >Q8YQ88.1 Y3946_ANASP Putative ABC transporter ATP-binding protein alr3946 EC=3.6.3.- Length = 274 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 150/229 (65%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 L FE V + YP T + L G+T IP+G + AL+G NG GK+TLF A GL +PQ G V Sbjct: 6 LTFEQVYYTYPGTQQSVLNGITLQIPQGKRCALIGRNGCGKTTLFSLANGLYKPQQGRVY 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 + Y +K L LR++VGLVFQ+PEQQL+ ST EDIS+GL G+P A+I R Sbjct: 66 WQEKALQYDRKNLMQLRQKVGLVFQNPEQQLVASTVEEDISYGLCNLGLPIADIQQRVTQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L LT L ++P+H LSLGQKKR +LA V+ + PEL+LLDEPT+YLD L+ L Sbjct: 126 ALVEFELTELAERPVHHLSLGQKKRVSLADVMVLRPELLLLDEPTAYLDRPQSRNLMAML 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 + I++ GTT++MA+HD++L Y W+DW+ V+D G G PE IF+ E Sbjct: 186 NKIYKSGTTILMASHDLDLVYCWSDWVFVMDAGRLILEGKPEDIFSQRE 234 >B4W135.1 B4W135_9CYAN ABC transporter, ATP-binding protein Length = 285 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/277 (42%), Positives = 160/277 (57%), Gaps = 2/277 (0%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 + +D+V+ YP P RGL I + KTA++G NGSGKS+LFL GL + Q G + Sbjct: 2 IQLKDIVYTYPGQNTPLFRGLNLRITQSKKTAIIGQNGSGKSSLFLLIDGLHKVQQGKIY 61 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 + Y K L R+R+GL FQDPEQQL+ T +EDI++GL +P+AE R Sbjct: 62 WKNEELKYNHKFLNQWRQRIGLAFQDPEQQLVAGTVIEDIAYGLANLQLPKAEFEQRLDD 121 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 + L L + P+H LSLGQK+R ALAGV+A++PEL+LLDEPT+YLD + L Sbjct: 122 AIADFVLQELVNLPLHYLSLGQKRRVALAGVMALKPELLLLDEPTAYLDRRQTHNFMQEL 181 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGEXXXXXXXXXXX 266 D IH GTTVV+ATHD+++AY+WADW +VL QG G EA+F+ E Sbjct: 182 DRIHESGTTVVLATHDLDIAYQWADWFLVLHQGQLVMEGEAEAVFSQRELIEDLQLGLPT 241 Query: 267 XXELWHSLPPRVTAGH--AAPRNAEEFKAALSSLLGE 301 ++W +LP + + PR E LS L + Sbjct: 242 VWQVWQALPKHLCRSEYTSVPRTVSELNEKLSETLTQ 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,782,056,261 Number of extensions: 71665893 Number of successful extensions: 465994 Number of sequences better than 1.0e-05: 88873 Number of HSP's gapped: 351802 Number of HSP's successfully gapped: 93979 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)