BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0053.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z7I1.1 C0Z7I1_BREBN Precorrin-6x reductase EC=1.3.1.54 219 1e-55 B1HRF4.1 B1HRF4_LYSSC Probable cobalt-precorrin-6A reductase EC=... 216 9e-55 A3IB93.1 A3IB93_9BACI Precorrin-6x reductase 215 3e-54 O87691.1 O87691_BACME Precorrin-6x reductase 214 6e-54 C3J3D9.1 C3J3D9_9BACI Response regulator receiver protein 197 6e-49 >C0Z7I1.1 C0Z7I1_BREBN Precorrin-6x reductase EC=1.3.1.54 Length = 257 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 148/222 (66%), Gaps = 3/222 (1%) Query: 1 VTPSAAERLEAAGITTRVGRLDQQGMIACLRGLDCSAIIDASHPFAQEAHDHAMGAAEAL 60 VT +AA+ +E AG+ +VGRL + ++ ++DASHPFA+EA +AM A+ Sbjct: 30 VTDNAAKSMEEAGVPVQVGRLTADDIQQLIQDRAVQCVVDASHPFAEEASKNAMAGAQGA 89 Query: 61 ELPYLRYERRSLKYEPHPRLLVVSSYGEAARRAKQLKGSVMLTTGGKTLEIFAEALLGDP 120 +PY+RYER SL +L+VV Y +AA A + +G +MLTTG KTL+ F + LLG P Sbjct: 90 GVPYIRYERESLSSPGSEKLIVVEDYVQAAELAAEKRGVIMLTTGSKTLKTFTDRLLGLP 149 Query: 121 AIRLTVRLLPCLENMQKCHLLGIEQRNIIALQGPFSRELNEALYRQYGTQVMVTKESGAE 180 L R+LP L+NMQKC LG+EQ+NI+A+QGPFS+ELN+ALY YG +M+TKESG Sbjct: 150 DTTLVARMLPRLDNMQKCEELGVEQKNIVAMQGPFSKELNKALYEHYGVTLMITKESGKV 209 Query: 181 GSLDEKVHAALDMGIYVILIARPQAFYKGHGRVYESFEEIVS 222 G+ DEKV AAL+MGI I+I RP+ Y G + FE +++ Sbjct: 210 GAFDEKVEAALEMGIETIVIGRPKIDY---GTKFSDFESVLT 248 >B1HRF4.1 B1HRF4_LYSSC Probable cobalt-precorrin-6A reductase EC=1.3.1.- Length = 250 Score = 216 bits (551), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 148/224 (66%), Gaps = 4/224 (1%) Query: 1 VTPSAAERLEAAGITTRVGRLDQQGMIACLRGLDCSAIIDASHPFAQEAHDHAMGAAEAL 60 VT SAA L G+ + +GRL + M + ++DASHPFA+EA +AM AAE Sbjct: 27 VTESAASSLADVGLPSLIGRLTAEEMATIIMEQGFQLVVDASHPFAEEASKNAMAAAEKA 86 Query: 61 ELPYLRYERRSLKYEPHPRLLVVSSYGEAARRAKQLKGSVMLTTGGKTLEIFAEALLGDP 120 ++PY+RYER Y HP + VV Y EAA+ A + +G +MLTTG KTL F + L G Sbjct: 87 QVPYIRYERAHEHY-AHPLITVVKDYEEAAQLAAEKRGVIMLTTGSKTLATFTKVLQGLE 145 Query: 121 AIRLTVRLLPCLENMQKCHLLGIEQRNIIALQGPFSRELNEALYRQYGTQVMVTKESGAE 180 R+ R+LP L+NM+KC LG+ QR+I+A+QGPFS+ELNEAL+RQYG +M+TKESG Sbjct: 146 NTRVIARMLPRLDNMEKCEALGVAQRDIVAIQGPFSKELNEALFRQYGVTLMITKESGKV 205 Query: 181 GSLDEKVHAALDMGIYVILIARPQAFYKGHGRVYESFEEIVSAV 224 GS+DEK+ AAL I ILIARP Y G+ Y +FEE++ AV Sbjct: 206 GSVDEKLEAALACSIETILIARPNIKY---GQQYSTFEEVLQAV 246 >A3IB93.1 A3IB93_9BACI Precorrin-6x reductase Length = 253 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 148/224 (66%), Gaps = 4/224 (1%) Query: 1 VTPSAAERLEAAGITTRVGRLDQQGMIACLRGLDCSAIIDASHPFAQEAHDHAMGAAEAL 60 VT SAA L AG+ +GRL + M + ++DASHPFA+EA +AM AAE Sbjct: 30 VTESAASSLADAGLPHLIGRLTAEEMATIISEQGFQLVVDASHPFAEEASKNAMAAAEKA 89 Query: 61 ELPYLRYERRSLKYEPHPRLLVVSSYGEAARRAKQLKGSVMLTTGGKTLEIFAEALLGDP 120 ++PY+RYER Y HP + VV Y EAA+ A + +G +MLTTG KTL F + L G Sbjct: 90 QVPYIRYERAHEHY-VHPLITVVKDYEEAAQLAAEKRGVIMLTTGSKTLATFTKVLQGLE 148 Query: 121 AIRLTVRLLPCLENMQKCHLLGIEQRNIIALQGPFSRELNEALYRQYGTQVMVTKESGAE 180 R+ R+LP L+NM+KC LG+ QR+I+A+QGPFS+ELNEAL+RQYG +M+TKESG Sbjct: 149 NTRVIARMLPRLDNMEKCEALGVAQRDIVAIQGPFSKELNEALFRQYGVTLMITKESGKV 208 Query: 181 GSLDEKVHAALDMGIYVILIARPQAFYKGHGRVYESFEEIVSAV 224 GS+DEK+ AAL I +LIARP Y G+ Y +FEE++ AV Sbjct: 209 GSVDEKLEAALACSIETLLIARPNIKY---GQQYSTFEEVLQAV 249 >O87691.1 O87691_BACME Precorrin-6x reductase Length = 255 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/224 (49%), Positives = 155/224 (69%), Gaps = 4/224 (1%) Query: 1 VTPSAAERLEAAGITTRVGRLDQQGMIACLRGLDCSAIIDASHPFAQEAHDHAMGAAEAL 60 VT +AA L+ A + ++GRL ++ M + AI+DASHPFA+EA +A+GAA Sbjct: 30 VTDNAAIELQRAEVKVKIGRLTKEDMTDFINEHGVKAIVDASHPFAEEASKNAIGAAAET 89 Query: 61 ELPYLRYERRSLKYEPHPRLLVVSSYGEAARRAKQLKGSVMLTTGGKTLEIFAEALLGDP 120 +PY+RYER S + + + +VS+Y EAA A + KG +MLTTG KTL++F E LL Sbjct: 90 AIPYIRYERASQAF-TYDNMTMVSTYEEAAEVAAEKKGVIMLTTGSKTLQVFTEKLLPLS 148 Query: 121 AIRLTVRLLPCLENMQKCHLLGIEQRNIIALQGPFSRELNEALYRQYGTQVMVTKESGAE 180 +RL R+LP L+NM+KC LG+ Q+NIIA+QGPF++E + ALY+QYG VMVTKESG Sbjct: 149 DVRLVARMLPRLDNMEKCQQLGLPQKNIIAIQGPFTKEFDRALYKQYGVTVMVTKESGKV 208 Query: 181 GSLDEKVHAALDMGIYVILIARPQAFYKGHGRVYESFEEIVSAV 224 GS+D+KV AA ++G+ +I+I RP+ Y G VY +FEE+V A+ Sbjct: 209 GSVDKKVEAAKELGLDIIMIGRPKIEY---GTVYSTFEEVVHAL 249 >C3J3D9.1 C3J3D9_9BACI Response regulator receiver protein Length = 258 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 144/224 (64%), Gaps = 4/224 (1%) Query: 1 VTPSAAERLEAAGITTRVGRLDQQGMIACLRGLDCSAIIDASHPFAQEAHDHAMGAAEAL 60 VT AAE+L +AGI VGRLD + + AI+DASHPFA+EA +AM AA Sbjct: 30 VTDHAAEQLRSAGIRAYVGRLDASQLADLAKAEGAKAIVDASHPFAEEASKNAMQAAADA 89 Query: 61 ELPYLRYERRSLKYEPHPRLLVVSSYGEAARRAKQLKGSVMLTTGGKTLEIFAEALLGDP 120 LPY+RYER++ + ++ V SY EAA A + G VMLTTG KT++IFA LLG P Sbjct: 90 GLPYIRYERQASSFSSE-KVTFVDSYEEAADLAAEKGGVVMLTTGSKTIDIFAAKLLGRP 148 Query: 121 AIRLTVRLLPCLENMQKCHLLGIEQRNIIALQGPFSRELNEALYRQYGTQVMVTKESGAE 180 +++ R+LP +N+ KC LG Q I+ +QGPF++EL+ ALYR +G V+VTKESG Sbjct: 149 DVKVIARMLPRKDNLDKCERLGFSQEQIVMMQGPFTKELDRALYRHFGVTVVVTKESGKV 208 Query: 181 GSLDEKVHAALDMGIYVILIARPQAFYKGHGRVYESFEEIVSAV 224 G +DEK+ AA ++GI VI+I RP+ Y G V+ F ++ A+ Sbjct: 209 GFVDEKIAAAEELGIDVIVIRRPRLSY---GIVHHDFAGVLDAL 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,285,766 Number of extensions: 47058385 Number of successful extensions: 134216 Number of sequences better than 1.0e-05: 338 Number of HSP's gapped: 133828 Number of HSP's successfully gapped: 338 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)