BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0033.p
         (60 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6LSW0.1 A6LSW0_CLOB8 Putative uncharacterized protein                 84   3e-15
B2V121.1 B2V121_CLOBA Putative uncharacterized protein                 82   2e-14
B2TKS3.1 B2TKS3_CLOBB Putative uncharacterized protein                 81   3e-14
C4CG33.1 C4CG33_9ACTN Putative uncharacterized protein                 67   6e-10
Q3B469.1 Q3B469_PELLD Putative uncharacterized protein                 66   1e-09

>A6LSW0.1 A6LSW0_CLOB8 Putative uncharacterized protein
          Length = 59

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 50/58 (86%)

Query: 1  MSVKEQVYDIIKASETPLSAGEVEKLSGLERKAIDKAFTELKKENAIVSPIRCKWEAA 58
          MSVKE+V ++++ +  P+SAGEVEKLSGL+RK ID AF ELKKE+AI+SP+RCKWE A
Sbjct: 1  MSVKEKVLEVMREAGKPVSAGEVEKLSGLDRKEIDNAFKELKKESAIISPVRCKWEPA 58


>B2V121.1 B2V121_CLOBA Putative uncharacterized protein
          Length = 60

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 1  MSVKEQVYDIIKASETPLSAGEVEKLSGLERKAIDKAFTELKKENAIVSPIRCKWEAAVK 60
          M +K+Q+ + +  +  PLSAGEVEKLSGL+RK IDK F ELKKE  I+SP+RCKWE A K
Sbjct: 1  MDIKQQILNTMNEANKPLSAGEVEKLSGLDRKDIDKTFKELKKEELIISPVRCKWEPANK 60


>B2TKS3.1 B2TKS3_CLOBB Putative uncharacterized protein
          Length = 60

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 1  MSVKEQVYDIIKASETPLSAGEVEKLSGLERKAIDKAFTELKKENAIVSPIRCKWEAAVK 60
          M +K+Q+ + +  +  PLSAGEVEKLSGL+RK IDK F ELKKE  I+SP+RCKWE A K
Sbjct: 1  MDIKQQILNTMSEANKPLSAGEVEKLSGLDRKDIDKTFKELKKEELIISPVRCKWEPANK 60


>C4CG33.1 C4CG33_9ACTN Putative uncharacterized protein
          Length = 105

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 16  TPLSAGEVEKLSGLERKAIDKAFTELKKENAIVSPIRCKWEAA 58
           TPL+AG++ +LSGL+RK +DKA  ELKK  AIVSP+RCKWE A
Sbjct: 62  TPLNAGKIAELSGLDRKVVDKAMAELKKTGAIVSPVRCKWEPA 104


>Q3B469.1 Q3B469_PELLD Putative uncharacterized protein
          Length = 59

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 1  MSVKEQVYDIIKASETPLSAGEVEKLSGLERKAIDKAFTELKKENAIVSPIRCKWE 56
          M  KE V D++K    PLSAG++ + SGLERK +DKA  +LK E AI+SP RC WE
Sbjct: 1  MDSKETVLDVLKKEGAPLSAGQIAEKSGLERKDVDKAMKQLKDEGAILSPKRCYWE 56


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 314,495,421
Number of extensions: 8630453
Number of successful extensions: 24291
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 24292
Number of HSP's successfully gapped: 20
Length of query: 60
Length of database: 3,060,696,203
Length adjustment: 32
Effective length of query: 28
Effective length of database: 2,759,223,723
Effective search space: 77258264244
Effective search space used: 77258264244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)