BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0031.p
         (56 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C5D581.1 C5D581_9BACI Putative uncharacterized protein                 86   1e-15
Q3AFW9.1 Q3AFW9_CARHZ Putative uncharacterized protein                 83   8e-15
Q8CV73.1 Q8CV73_OCEIH Hypothetical conserved protein                   81   3e-14
C3A0J6.1 C3A0J6_BACMY Putative uncharacterized protein                 73   1e-11
C2XNL8.1 C2XNL8_BACCE Putative uncharacterized protein                 73   1e-11

>C5D581.1 C5D581_9BACI Putative uncharacterized protein
          Length = 63

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 45/52 (86%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPERK 52
          MA KKSFPLRIDP L+E +ERWA +EFRSVN HIE+LLREA KRAGRL +RK
Sbjct: 1  MAKKKSFPLRIDPALYEVIERWAHDEFRSVNAHIEFLLREAAKRAGRLTQRK 52


>Q3AFW9.1 Q3AFW9_CARHZ Putative uncharacterized protein
          Length = 58

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 45/56 (80%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPERKRREE 56
          MA KK+FPLRIDP L+E LE+WA +EFRSVN HIEYLLREA K+AGRL +  R  +
Sbjct: 1  MARKKNFPLRIDPALYEILEKWAADEFRSVNSHIEYLLREAAKKAGRLKDNNRSNQ 56


>Q8CV73.1 Q8CV73_OCEIH Hypothetical conserved protein
          Length = 59

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 48/55 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPERKRRE 55
          M  KK+FPLRIDPEL++ L++WA +EFRSVN H+E+LLRE+ KRAGRLP+++ ++
Sbjct: 1  MPKKKNFPLRIDPELYDILQKWAQDEFRSVNSHVEFLLRESTKRAGRLPKKQDKK 55


>C3A0J6.1 C3A0J6_BACMY Putative uncharacterized protein
          Length = 54

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLRE 40
          MA KKSFPLRIDPELH  +E+WA +EFRSVN HIEYLLRE
Sbjct: 1  MAKKKSFPLRIDPELHAVIEKWANDEFRSVNAHIEYLLRE 40


>C2XNL8.1 C2XNL8_BACCE Putative uncharacterized protein
          Length = 54

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLRE 40
          MA KKSFPLRIDPELH  +E+WA +EFRSVN HIEYLLRE
Sbjct: 1  MAKKKSFPLRIDPELHAVIEKWANDEFRSVNAHIEYLLRE 40


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 327,722,870
Number of extensions: 9176275
Number of successful extensions: 27829
Number of sequences better than 1.0e-05: 191
Number of HSP's gapped: 27829
Number of HSP's successfully gapped: 191
Length of query: 56
Length of database: 3,060,696,203
Length adjustment: 29
Effective length of query: 27
Effective length of database: 2,787,486,768
Effective search space: 75262142736
Effective search space used: 75262142736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)