BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0030.p (645 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB64.1 B3KB64_9BACI Threonyl-tRNA synthetase 1118 0.0 B1DDJ1.1 B1DDJ1_9BACL Threonyl-tRNA synthetase 1015 0.0 B7GGN9.1 SYT_ANOFW Threonyl-tRNA synthetase EC=6.1.1.3 890 0.0 Q9K866.1 SYT_BACHD Threonyl-tRNA synthetase EC=6.1.1.3 889 0.0 C2WCY0.1 C2WCY0_BACCE Threonyl-tRNA synthetase 889 0.0 >B3KB64.1 B3KB64_9BACI Threonyl-tRNA synthetase Length = 645 Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/645 (82%), Positives = 577/645 (89%) Query: 1 MSVNIKLPDGSVREYXXXXXXXXXXXXXXXXLRKNAAAGKLNGVVVDLATPLQEGALVEI 60 M+++IKLPDGSVREY LRKNA AGK++G+VVDL+TPLQ+GAL+EI Sbjct: 1 MAISIKLPDGSVREYEAGSNIEDVAASISSGLRKNAVAGKMDGIVVDLSTPLQDGALIEI 60 Query: 61 VTLDSPEGLEVMRHSTAHLMAQAVRRLFGTKEVKLGVGPVIEDGFYYDMDLEHPLNPEDL 120 VT D+PEGLEVMRHSTAHL+AQA +RL+G KEVKLGVGPVIEDGFYYDMDLE PLNPEDL Sbjct: 61 VTQDTPEGLEVMRHSTAHLLAQATKRLYGQKEVKLGVGPVIEDGFYYDMDLEEPLNPEDL 120 Query: 121 LKIEKEMERIVSENLPIIRKEVSRKEALERFGELGDPYKLELIEALPEDSVITIYEQGEF 180 KIEKEMERI+ ENLPI+RKEVSR +AL FGELGDPYKLELI ALPEDS+ITIYEQGEF Sbjct: 121 QKIEKEMERIIGENLPIVRKEVSRADALRIFGELGDPYKLELINALPEDSIITIYEQGEF 180 Query: 181 FDLCRGPHVPSTAKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAWIKKAQLDEHLRLLEE 240 FDLCRGPHVPST KIKVFKLMNVAGAYWRGDSKNKMLQRVYGTA++KKAQLDEHLRLLEE Sbjct: 181 FDLCRGPHVPSTGKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAFVKKAQLDEHLRLLEE 240 Query: 241 AKKRDHRKLGKELEIFTFNQLVGQGLPIWLPKGAKLRSILERYIVDLEASLGYQHVYTPV 300 AKKRDHRKLGKEL++FTF+QLVGQGLPIWLP GAKLR LERYIVD+E LGYQHVYTPV Sbjct: 241 AKKRDHRKLGKELQMFTFSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGYQHVYTPV 300 Query: 301 LGNVELYKTSGHWEHYQEDMFPKMTIDTEEFVLRPMNCPHHMMIYKSSMHSYRDLPIRIA 360 LGNVELYKTSGHWEHYQEDMFPKM +D EE VLRPMNCPHHMM+YKS MHSYRDLPIRIA Sbjct: 301 LGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYRDLPIRIA 360 Query: 361 ELGTMHRYEMSGALTGLHRVRSMTLNDSHIFCRLDQIKSEFTRVLDLIKRVYSDFGIHDY 420 ELG HRYEMSGALTGLHRVR+MTLNDSHIFCR DQIK EF RV+ LI VY DFGIHDY Sbjct: 361 ELGMQHRYEMSGALTGLHRVRAMTLNDSHIFCRPDQIKEEFARVIQLIMTVYKDFGIHDY 420 Query: 421 RFRLSYRDPQDTEKYFQNDEMWETAQRMLREVAEEAGLPFFEADGEAAFYGPKLDVQIRT 480 RFRLSYRDPQDTEKYFQNDEMWE +QRMLREV E +PF+EA+GEAAFYGPKLDVQIRT Sbjct: 421 RFRLSYRDPQDTEKYFQNDEMWEMSQRMLREVVESLDMPFYEAEGEAAFYGPKLDVQIRT 480 Query: 481 ALGKEETLSTVQIDFLLPERFELEYVGDDGQKHRPVVLHRGILGTMERFVAFLLENFAGS 540 ALGKEETLSTVQ+DFLLPERFELEYVGDDGQKHRPVV+HRGILGTMERF AFLLENFAG+ Sbjct: 481 ALGKEETLSTVQLDFLLPERFELEYVGDDGQKHRPVVIHRGILGTMERFTAFLLENFAGA 540 Query: 541 LPLWLSPQQVKIIPVSSAFDDYAKDVEAKLLASGIRAEVDLRNEKMGYKIREAQLEKLPY 600 LPLWLSP QVK+IPVS+AF+DYAK+V KL +GI E DLRNEK+GYKIREAQLEK+PY Sbjct: 541 LPLWLSPVQVKVIPVSNAFEDYAKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPY 600 Query: 601 MFVVGENEMNAGSVSIRKRGEGDIGAQPLQEVIATLVKEVAERVI 645 MF+VGENE NAG+VS+RKRGEGDIGAQPL E+I L +E+ V+ Sbjct: 601 MFIVGENEKNAGAVSVRKRGEGDIGAQPLDEIILKLREEINTHVV 645 >B1DDJ1.1 B1DDJ1_9BACL Threonyl-tRNA synthetase Length = 645 Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/645 (73%), Positives = 549/645 (85%) Query: 1 MSVNIKLPDGSVREYXXXXXXXXXXXXXXXXLRKNAAAGKLNGVVVDLATPLQEGALVEI 60 MS+ + PDG+VREY LRKNA AGK+NG VVD+ +P++ A +EI Sbjct: 1 MSIQVTFPDGAVREYAAGTTIEEVAGSISPGLRKNAIAGKINGKVVDVYSPIESDAAIEI 60 Query: 61 VTLDSPEGLEVMRHSTAHLMAQAVRRLFGTKEVKLGVGPVIEDGFYYDMDLEHPLNPEDL 120 VT++S +GLEV RHSTAHLMAQA++RL+G VKLG+GPVIEDGFYYD+D+E L PEDL Sbjct: 61 VTVESADGLEVYRHSTAHLMAQAIKRLYGNANVKLGIGPVIEDGFYYDIDMEQSLTPEDL 120 Query: 121 LKIEKEMERIVSENLPIIRKEVSRKEALERFGELGDPYKLELIEALPEDSVITIYEQGEF 180 KIEKEM+RIV+ENL I R+ VSR EAL F EL D KLELI LPEDSVIT+Y+QGEF Sbjct: 121 TKIEKEMQRIVNENLDIRRRVVSRDEALAIFTELDDNLKLELIRDLPEDSVITMYDQGEF 180 Query: 181 FDLCRGPHVPSTAKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAWIKKAQLDEHLRLLEE 240 FDLCRGPH+PST +IK FKL++VAGAYWRGDSKNKMLQR+YGTA+ KKA+LDEHL LEE Sbjct: 181 FDLCRGPHLPSTGRIKAFKLLSVAGAYWRGDSKNKMLQRIYGTAFAKKAELDEHLHFLEE 240 Query: 241 AKKRDHRKLGKELEIFTFNQLVGQGLPIWLPKGAKLRSILERYIVDLEASLGYQHVYTPV 300 AKKRDHRKLGKEL++FTF++ VGQGLP+WLP GAK+R LERYIVDLE LGY+HVYTPV Sbjct: 241 AKKRDHRKLGKELKMFTFSREVGQGLPLWLPNGAKVRRTLERYIVDLEERLGYEHVYTPV 300 Query: 301 LGNVELYKTSGHWEHYQEDMFPKMTIDTEEFVLRPMNCPHHMMIYKSSMHSYRDLPIRIA 360 L NVELYK SGHWEHY EDMFP M +D EE VLRPMNCPHHMM+YKS M SYRDLP+RIA Sbjct: 301 LANVELYKISGHWEHYSEDMFPVMALDNEELVLRPMNCPHHMMVYKSDMRSYRDLPVRIA 360 Query: 361 ELGTMHRYEMSGALTGLHRVRSMTLNDSHIFCRLDQIKSEFTRVLDLIKRVYSDFGIHDY 420 E+GTMHRYEMSGALTGLHRVR+MTLND+HIFCR DQIK EF RV++LI++VY DFGI +Y Sbjct: 361 EMGTMHRYEMSGALTGLHRVRAMTLNDAHIFCRPDQIKEEFARVVNLIRKVYEDFGIKEY 420 Query: 421 RFRLSYRDPQDTEKYFQNDEMWETAQRMLREVAEEAGLPFFEADGEAAFYGPKLDVQIRT 480 RFRLSYRDPQDTEKYFQNDEMWE +QRMLREV EE GLPFFEA+GEAAFYGPKLDVQI+T Sbjct: 421 RFRLSYRDPQDTEKYFQNDEMWEMSQRMLREVVEELGLPFFEAEGEAAFYGPKLDVQIKT 480 Query: 481 ALGKEETLSTVQIDFLLPERFELEYVGDDGQKHRPVVLHRGILGTMERFVAFLLENFAGS 540 ALGKEETLST Q+DFLLP+RFELEY+G+DG+KHRPVV+HRGI+ TMER AFLLENFAG+ Sbjct: 481 ALGKEETLSTAQLDFLLPDRFELEYIGEDGKKHRPVVIHRGIISTMERMTAFLLENFAGA 540 Query: 541 LPLWLSPQQVKIIPVSSAFDDYAKDVEAKLLASGIRAEVDLRNEKMGYKIREAQLEKLPY 600 LPLWLSP Q K+IPVS+A++ YA++VE KL +GIR E DLRNEK+GYKIREAQLEKLPY Sbjct: 541 LPLWLSPVQAKVIPVSTAYEAYAREVEEKLQLAGIRVESDLRNEKLGYKIREAQLEKLPY 600 Query: 601 MFVVGENEMNAGSVSIRKRGEGDIGAQPLQEVIATLVKEVAERVI 645 M VVGENE +GSVS+RKRGEGDIGA+P+ E++ L E+A + I Sbjct: 601 MLVVGENEAQSGSVSVRKRGEGDIGAKPVAELVELLQNEIATKTI 645 >B7GGN9.1 SYT_ANOFW Threonyl-tRNA synthetase EC=6.1.1.3 Length = 643 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/639 (65%), Positives = 517/639 (80%), Gaps = 3/639 (0%) Query: 3 VNIKLPDGSVREYXXXXXXXXXXXXXXXXLRKNAAAGKLNGVVVDLATPLQEGALVEIVT 62 V I PDG+V+E+ L+K A AGKLN ++DL TP++E + I+T Sbjct: 5 VKITFPDGAVKEFPKGVTTEDIAASISPGLKKKAIAGKLNERMIDLRTPIEEDGAISIIT 64 Query: 63 LDSPEGLEVMRHSTAHLMAQAVRRLFGTKEVKLGVGPVIEDGFYYDMDLEHPLNPEDLLK 122 D PE L+++RHSTAHLMAQAV+RL+ K+VKLGVGPVIE+GFYYD+D++ P+ EDL K Sbjct: 65 QDMPEALDILRHSTAHLMAQAVKRLY--KDVKLGVGPVIENGFYYDIDVDVPITAEDLPK 122 Query: 123 IEKEMERIVSENLPIIRKEVSRKEALERFGELGDPYKLELIEALPEDSVITIYEQGEFFD 182 IE+EM++IV ENL I+RKEVSR+EA+ R+ E+GDP K+ELI +PE V++IYEQGEFFD Sbjct: 123 IEQEMKKIVKENLDIVRKEVSREEAIRRYEEIGDPLKIELINDIPEGEVVSIYEQGEFFD 182 Query: 183 LCRGPHVPSTAKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAWIKKAQLDEHLRLLEEAK 242 LCRG HVPST KIK FKL++VAGAYWRGDSKNKMLQR+YGTA+ KK LDE+LRLL+EAK Sbjct: 183 LCRGVHVPSTGKIKEFKLLSVAGAYWRGDSKNKMLQRIYGTAFFKKEDLDEYLRLLQEAK 242 Query: 243 KRDHRKLGKELEIFTFNQLVGQGLPIWLPKGAKLRSILERYIVDLEASLGYQHVYTPVLG 302 +RDHRKLGKEL++F +Q VGQGLP+WLPKGA +R +ERYIVD E SLGYQHVYTPVLG Sbjct: 243 ERDHRKLGKELDLFMTSQKVGQGLPLWLPKGATIRRTIERYIVDKELSLGYQHVYTPVLG 302 Query: 303 NVELYKTSGHWEHYQEDMFPKMTIDTEEFVLRPMNCPHHMMIYKSSMHSYRDLPIRIAEL 362 +VELYKTSGHW+HY++ MFP M +D E+ VLRPMNCPHHMM+YK +HSYR+LPIRIAEL Sbjct: 303 SVELYKTSGHWDHYKDGMFPPMEMDNEQLVLRPMNCPHHMMVYKHKIHSYRELPIRIAEL 362 Query: 363 GTMHRYEMSGALTGLHRVRSMTLNDSHIFCRLDQIKSEFTRVLDLIKRVYSDFGIHDYRF 422 GTMHRYEMSGALTGL RVR MTLND+HIF R DQIK EF RV++LI VY DFG+ DY F Sbjct: 363 GTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDEFKRVVNLILDVYKDFGLTDYSF 422 Query: 423 RLSYRDPQDTEKYFQNDEMWETAQRMLREVAEEAGLPFFEADGEAAFYGPKLDVQIRTAL 482 RLSYRDPQD EKY+ +D MWE AQ ML+E +E GL ++EA+GEAAFYGPKLDVQ+RTAL Sbjct: 423 RLSYRDPQDKEKYYDDDAMWEKAQSMLKEAMDELGLDYYEAEGEAAFYGPKLDVQVRTAL 482 Query: 483 GKEETLSTVQIDFLLPERFELEYVGDDGQKHRPVVLHRGILGTMERFVAFLLENFAGSLP 542 GK+ETLSTVQ+DFLLPERF+L Y+G+DG+ HRPVV+HRG++ TMERFVAFL+E + G+ P Sbjct: 483 GKDETLSTVQLDFLLPERFDLTYIGEDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFP 542 Query: 543 LWLSPQQVKIIPVSSAFD-DYAKDVEAKLLASGIRAEVDLRNEKMGYKIREAQLEKLPYM 601 WL+P QV++IPV+ + DYA +V+ L +GIR EVD R EK+GYKIREAQ++K+PYM Sbjct: 543 TWLAPIQVQVIPVAPSIHMDYAYEVKHALQVAGIRVEVDEREEKIGYKIREAQMQKIPYM 602 Query: 602 FVVGENEMNAGSVSIRKRGEGDIGAQPLQEVIATLVKEV 640 VVG+NE+N +V++RK GE PL + ++ KEV Sbjct: 603 LVVGDNEVNERAVNVRKYGEQKSETMPLDAFVDSIAKEV 641 >Q9K866.1 SYT_BACHD Threonyl-tRNA synthetase EC=6.1.1.3 Length = 645 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/639 (65%), Positives = 510/639 (79%), Gaps = 1/639 (0%) Query: 3 VNIKLPDGSVREYXXXXXXXXXXXXXXXXLRKNAAAGKLNGVVVDLATPLQEGALVEIVT 62 +NI PDG+V+E+ L+K A AG L+G ++DL TP+++ + IVT Sbjct: 5 INITFPDGAVKEFPKGTTTAEIAGSISPGLKKKALAGMLDGTLLDLNTPIEQDGTITIVT 64 Query: 63 LDSPEGLEVMRHSTAHLMAQAVRRLFGTKEVKLGVGPVIEDGFYYDMDLEHPLNPEDLLK 122 +S E LEV+RHSTAH+MAQA++RLF + VKLGVGPVIE GFYYD+D++ L PEDL K Sbjct: 65 PESDEALEVLRHSTAHVMAQALKRLFKDRNVKLGVGPVIEGGFYYDVDMDESLTPEDLPK 124 Query: 123 IEKEMERIVSENLPIIRKEVSRKEALERFGELGDPYKLELIEALPEDSVITIYEQGEFFD 182 IEKEM++I+ ENLPI R VSR+EAL R+ E+GDPYK+ELI LPED ITIYEQGEFFD Sbjct: 125 IEKEMKKIIGENLPIERVVVSREEALARYEEVGDPYKIELINDLPEDETITIYEQGEFFD 184 Query: 183 LCRGPHVPSTAKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAWIKKAQLDEHLRLLEEAK 242 LCRG HVPST K+K FKL+N+AGAYWRGDS NKMLQR+YGTA+ KKA LDEHLRLLEEAK Sbjct: 185 LCRGVHVPSTGKLKEFKLLNLAGAYWRGDSSNKMLQRIYGTAFFKKADLDEHLRLLEEAK 244 Query: 243 KRDHRKLGKELEIFTFNQLVGQGLPIWLPKGAKLRSILERYIVDLEASLGYQHVYTPVLG 302 +RDHRKLGKEL IF +Q VGQGLP+WLPKGA +R I+ERYIVD E LGYQHVYTPVL Sbjct: 245 ERDHRKLGKELGIFALSQKVGQGLPLWLPKGATIRRIIERYIVDKEEKLGYQHVYTPVLA 304 Query: 303 NVELYKTSGHWEHYQEDMFPKMTIDTEEFVLRPMNCPHHMMIYKSSMHSYRDLPIRIAEL 362 + ELYKTSGHW+HY++DMFP M ++ EE VLRPMNCPHHMM+YK+ M SYR LP+RIAEL Sbjct: 305 SSELYKTSGHWDHYKDDMFPTMEMENEELVLRPMNCPHHMMVYKTEMRSYRQLPLRIAEL 364 Query: 363 GTMHRYEMSGALTGLHRVRSMTLNDSHIFCRLDQIKSEFTRVLDLIKRVYSDFGIHDYRF 422 G MHRYEMSGA++GL RVR MTLND+HIFCR DQIK EF RV+ LI+ VY DFG+ +Y F Sbjct: 365 GLMHRYEMSGAVSGLQRVRGMTLNDAHIFCRPDQIKDEFVRVVRLIQAVYEDFGLKNYSF 424 Query: 423 RLSYRDPQDTEKYFQNDEMWETAQRMLREVAEEAGLPFFEADGEAAFYGPKLDVQIRTAL 482 RLSYRDP+D EKYF +D MW AQ ML+E +E L +FEA+GEAAFYGPKLDVQ+RTAL Sbjct: 425 RLSYRDPEDKEKYFDDDNMWNKAQGMLKEAMDELELEYFEAEGEAAFYGPKLDVQVRTAL 484 Query: 483 GKEETLSTVQIDFLLPERFELEYVGDDGQKHRPVVLHRGILGTMERFVAFLLENFAGSLP 542 GK+ETLSTVQ+DFLLPERF+L YVG+DGQ HRPVV+HRG++ TMERFVAFLLE + G+ P Sbjct: 485 GKDETLSTVQLDFLLPERFDLTYVGEDGQPHRPVVVHRGVVSTMERFVAFLLEEYKGAFP 544 Query: 543 LWLSPQQVKIIPVS-SAFDDYAKDVEAKLLASGIRAEVDLRNEKMGYKIREAQLEKLPYM 601 WL+P QV++IPVS A +YAK+V+ L +GIR E+D R+EK+GYKIREAQ++K+PYM Sbjct: 545 TWLAPVQVQVIPVSPEAHLEYAKNVQETLQQAGIRVEIDERDEKIGYKIREAQMQKIPYM 604 Query: 602 FVVGENEMNAGSVSIRKRGEGDIGAQPLQEVIATLVKEV 640 V+G+ E+ A V++RK GE D + L E + + +E Sbjct: 605 LVLGDKEVEANGVNVRKYGEKDSSSMGLDEFVRHVAREA 643 >C2WCY0.1 C2WCY0_BACCE Threonyl-tRNA synthetase Length = 643 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/620 (66%), Positives = 510/620 (82%), Gaps = 3/620 (0%) Query: 3 VNIKLPDGSVREYXXXXXXXXXXXXXXXXLRKNAAAGKLNGVVVDLATPLQEGALVEIVT 62 V I PDG+V+E+ L+K A AGKLN ++DL+TP++E V I+T Sbjct: 5 VKITFPDGAVKEFPKGVTTEEIAASISPGLKKKAVAGKLNDEMIDLSTPIEEDGAVSIIT 64 Query: 63 LDSPEGLEVMRHSTAHLMAQAVRRLFGTKEVKLGVGPVIEDGFYYDMDLEHPLNPEDLLK 122 LDS EGL ++RHSTAHL+AQA++RL+ K+VKLG+GPVIE+GFYYD+D+E + ED K Sbjct: 65 LDSEEGLYILRHSTAHLLAQALKRLY--KDVKLGIGPVIENGFYYDIDMEEAITVEDFKK 122 Query: 123 IEKEMERIVSENLPIIRKEVSRKEALERFGELGDPYKLELIEALPEDSVITIYEQGEFFD 182 IEKEM++IV+ENL I+R EV R EAL R+ E+GD KL+LI LPED+VI+IYEQGEFFD Sbjct: 123 IEKEMQKIVNENLEIVRHEVPRAEALRRYEEIGDELKLDLINDLPEDAVISIYEQGEFFD 182 Query: 183 LCRGPHVPSTAKIKVFKLMNVAGAYWRGDSKNKMLQRVYGTAWIKKAQLDEHLRLLEEAK 242 LCRG H+PST KIKVFKL++VAGAYWRGDS NKMLQR+YGTA++KKA+LDEHLR+LEEAK Sbjct: 183 LCRGVHLPSTGKIKVFKLLSVAGAYWRGDSDNKMLQRIYGTAFVKKAELDEHLRMLEEAK 242 Query: 243 KRDHRKLGKELEIFTFNQLVGQGLPIWLPKGAKLRSILERYIVDLEASLGYQHVYTPVLG 302 +RDHRKLGKEL++FT +Q VGQGLP+WLPKGA +R I+ERYIVD EASLGY HVYTPVLG Sbjct: 243 ERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGYDHVYTPVLG 302 Query: 303 NVELYKTSGHWEHYQEDMFPKMTIDTEEFVLRPMNCPHHMMIYKSSMHSYRDLPIRIAEL 362 + ELY+TSGHW HY++ MFP M +D EE VLRPMNCPHHMM+YK+ +HSYR+LPIRIAEL Sbjct: 303 SRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL 362 Query: 363 GTMHRYEMSGALTGLHRVRSMTLNDSHIFCRLDQIKSEFTRVLDLIKRVYSDFGIHDYRF 422 GTMHRYEMSGAL+GL RVR MTLND+HIF R DQIK E RV++L VY DFG+ +Y F Sbjct: 363 GTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYKDFGLENYSF 422 Query: 423 RLSYRDPQDTEKYFQNDEMWETAQRMLREVAEEAGLPFFEADGEAAFYGPKLDVQIRTAL 482 RLSYRDP DT+KY+ +DEMWE AQ ML+E +E GL ++EA+GEAAFYGPKLDVQ+RTAL Sbjct: 423 RLSYRDPADTKKYYADDEMWEKAQSMLKEAMDEMGLEYYEAEGEAAFYGPKLDVQVRTAL 482 Query: 483 GKEETLSTVQIDFLLPERFELEYVGDDGQKHRPVVLHRGILGTMERFVAFLLENFAGSLP 542 GK+ETLSTVQ+DFLLPERFEL YVG+DG++HRPVV+HRG++ TMERFVAFL+E + G+ P Sbjct: 483 GKDETLSTVQLDFLLPERFELTYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFP 542 Query: 543 LWLSPQQVKIIPVSSAFD-DYAKDVEAKLLASGIRAEVDLRNEKMGYKIREAQLEKLPYM 601 WL+P QV++IPVS DYAK V+ +L +GIR EVD R EK+GYKIREAQ++K+PYM Sbjct: 543 TWLAPVQVQVIPVSPQVHLDYAKKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYM 602 Query: 602 FVVGENEMNAGSVSIRKRGE 621 VVG+NE+ V++RK GE Sbjct: 603 LVVGDNEVTENGVNVRKYGE 622 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,772,253,309 Number of extensions: 162887586 Number of successful extensions: 418675 Number of sequences better than 1.0e-05: 2412 Number of HSP's gapped: 410423 Number of HSP's successfully gapped: 2480 Length of query: 645 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 503 Effective length of database: 1,722,912,073 Effective search space: 866624772719 Effective search space used: 866624772719 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)