BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0024.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB70.1 B3KB70_9BACI 2-alkenal reductase EC=1.3.1.74 344 5e-93 B1DDI2.1 B1DDI2_9BACL 2-alkenal reductase EC=1.3.1.74 285 3e-75 Q2RKI5.1 Q2RKI5_MOOTA Peptidase S1 and S6, chymotrypsin/Hap 201 7e-50 A5D565.1 A5D565_PELTS Trypsin-like serine proteases 188 4e-46 C1TA76.1 C1TA76_9FIRM Trypsin-like serine protease with C-termin... 188 5e-46 >B3KB70.1 B3KB70_9BACI 2-alkenal reductase EC=1.3.1.74 Length = 553 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 171/268 (63%), Positives = 209/268 (77%) Query: 1 LTNQHVVDNADVIQVTVDGNTKPYEAKLLGYSKDLDLAVLKIEGKNFPTVQLGDSDSIKV 60 LTN+HV+ ADVIQVTV G KPYEAKLLG S +LDLAVLKIEG +FP+VQLGDSDS+KV Sbjct: 273 LTNEHVIHGADVIQVTVQGTKKPYEAKLLGSSYELDLAVLKIEGADFPSVQLGDSDSLKV 332 Query: 61 GSEVVAIGNPQGFDHTXXXXVLSAKNRSIDINEEDGSGTRNYKNLLQTDASIXXXXXXXX 120 G +VAIGNP GF+HT VLS+K R IDI +G RNY++LLQTDASI Sbjct: 333 GEWLVAIGNPHGFEHTVTAGVLSSKEREIDIQGTNGEQDRNYEHLLQTDASINPGNSGGP 392 Query: 121 XXXXXXQVIGMNVAVSTDSQGIGFAIAVNTIKEVVDKLEANQEIPKEPVPFIGASLMTIT 180 +VIGMNVAVS ++QGIGFAI +TIKEVV+ L+ N+E+PKEPVPFIGASL T+T Sbjct: 393 LLNLKGEVIGMNVAVSAEAQGIGFAIPSSTIKEVVEYLKNNEEVPKEPVPFIGASLGTVT 452 Query: 181 DEVAKQMGTDIKEGSVVAEIIFKSPAYTADLRPYDIITGANGKKYATSQDLITYIQTLKV 240 ++A+ +GTD+KEGS V ++F+SPAY ADLR YDII G +G KY T+QDLI IQ+ KV Sbjct: 453 PQIAQSLGTDVKEGSYVDSVVFRSPAYEADLRQYDIIVGVDGTKYPTAQDLIELIQSKKV 512 Query: 241 GDKITLNVVRDGKTLELPVTIGNKNDFN 268 GDKITLNVVR+GK ++L +TIG+KNDF+ Sbjct: 513 GDKITLNVVRNGKNMDLALTIGDKNDFD 540 >B1DDI2.1 B1DDI2_9BACL 2-alkenal reductase EC=1.3.1.74 Length = 545 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/269 (55%), Positives = 191/269 (71%), Gaps = 3/269 (1%) Query: 1 LTNQHVVDNADVIQVTVDGNTKPYEAKLLGYSKDLDLAVLKIEG-KNFPTVQLGDSDSIK 59 LTNQHVV ++D I+VTV G KP+ A+LLG S DLDLAVLK+ G K FPT+ LG SD I Sbjct: 277 LTNQHVVADSDKIEVTVQGYDKPFTAELLGSSFDLDLAVLKVTGDKAFPTLPLGSSDKIN 336 Query: 60 VGSEVVAIGNPQGFDHTXXXXVLSAKNRSIDINEEDGSGTRNYKNLLQTDASIXXXXXXX 119 +G VVAIGNP GFDHT VLSAK R IDI + DG TR YK+LLQTDASI Sbjct: 337 IGDWVVAIGNPYGFDHTVTVGVLSAKERPIDIQDTDG--TREYKHLLQTDASINPGNSGG 394 Query: 120 XXXXXXXQVIGMNVAVSTDSQGIGFAIAVNTIKEVVDKLEANQEIPKEPVPFIGASLMTI 179 +V+G+N AVS+ +QGIGFAI +TI+EV+D L+ N+E+PKEPVPFIGA L + Sbjct: 395 PLLNVNGEVVGINTAVSSQAQGIGFAIPTSTIQEVLDTLKNNKEVPKEPVPFIGAELGDV 454 Query: 180 TDEVAKQMGTDIKEGSVVAEIIFKSPAYTADLRPYDIITGANGKKYATSQDLITYIQTLK 239 TD +AKQ+G D +GS+V+ + + SPAY ADL+ +D+I G +GK + +Q LI I+ K Sbjct: 455 TDAIAKQLGMDKAQGSIVSNVYYNSPAYIADLKQFDVILGIDGKSFDGTQALIDEIKKRK 514 Query: 240 VGDKITLNVVRDGKTLELPVTIGNKNDFN 268 VGDK LN++R G+ ++L V IG+KN FN Sbjct: 515 VGDKAVLNIIRRGEKMDLQVEIGDKNKFN 543 >Q2RKI5.1 Q2RKI5_MOOTA Peptidase S1 and S6, chymotrypsin/Hap Length = 386 Score = 201 bits (510), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 109/265 (41%), Positives = 164/265 (61%), Gaps = 10/265 (3%) Query: 1 LTNQHVVDNADVIQVTVDGNTKPYEAKLLGYSKDLDLAVLKIE-GKNFPTVQLGDSDSIK 59 LTNQHVV+ A ++VT+ G KP A+++G LDLAVLK++ GK P + LGD++ ++ Sbjct: 128 LTNQHVVEGARQVKVTIVGFDKPLNAQVIGADSSLDLAVLKVDAGKPLPYLALGDTNKVR 187 Query: 60 VGSEVVAIGNPQGFDHTXXXXVLSAKNRSIDINEEDGSGTRNYKNLLQTDASIXXXXXXX 119 VG +AIGNP G DHT V+SAK R ID+ R+Y+NLLQTDA+I Sbjct: 188 VGDWAIAIGNPDGLDHTVTVGVISAKGRPIDVQN------RHYENLLQTDAAINPGNSGG 241 Query: 120 XXXXXXXQVIGMNVAVSTDSQGIGFAIAVNTIKEVVDKLEANQEIPKEPVPFIGASLMTI 179 +VIG+N AV+ D+QGIGFAI +T++ V+ L +I + P++G +L + Sbjct: 242 PLLNLKGEVIGINTAVNADAQGIGFAIPSSTVQPVLKDLMTKGKISR---PWLGVALQQV 298 Query: 180 TDEVAKQMGTDIKEGSVVAEIIFKSPAYTADLRPYDIITGANGKKYATSQDLITYIQTLK 239 T +VA +G +EG+VV +++ SPA A L+ YD+I +G+ + DL+ IQ++K Sbjct: 299 TPDVADILGLQGQEGAVVVQVVSGSPAAKAGLQKYDVILQVDGQAVKDASDLVNKIQSMK 358 Query: 240 VGDKITLNVVRDGKTLELPVTIGNK 264 +G ++ L V R G+TL + V +G K Sbjct: 359 IGQQVQLQVFRRGQTLNISVVLGEK 383 >A5D565.1 A5D565_PELTS Trypsin-like serine proteases Length = 386 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 107/254 (42%), Positives = 147/254 (57%), Gaps = 10/254 (3%) Query: 1 LTNQHVVDNADVIQVTVDGNTKPYEAKLLGYSKDLDLAVLKIE-GKNFPTVQLGDSDSIK 59 LTN+HV+ AD I+VTV G KPY+A+ +G DLDLAVLKI+ G + PT+ LG+SDS++ Sbjct: 129 LTNEHVIAGADRIEVTVAGRDKPYQARKVGADHDLDLAVLKIDAGNDLPTIPLGNSDSVR 188 Query: 60 VGSEVVAIGNPQGFDHTXXXXVLSAKNRSIDINEEDGSGTRNYKNLLQTDASIXXXXXXX 119 VG VVAIGNP G DHT V+SAK R + + + R YKNLLQTDASI Sbjct: 189 VGDWVVAIGNPYGLDHTVTVGVISAKGRPVTVED------RRYKNLLQTDASINPGNSGG 242 Query: 120 XXXXXXXQVIGMNVAVSTDSQGIGFAIAVNTIKEVVDKLEANQEIPKEPVPFIGASLMTI 179 +V+G+N A++ +QGIGFAI +T+K V D L + P++G L + Sbjct: 243 PLLNLNGEVVGINTAINAQAQGIGFAIPSSTVKAVFDDLVQKGGVSH---PWLGVYLQQV 299 Query: 180 TDEVAKQMGTDIKEGSVVAEIIFKSPAYTADLRPYDIITGANGKKYATSQDLITYIQTLK 239 T+E+A G G++VA ++ PA A LR DII NG DLI + Sbjct: 300 TEELASYFGLQDLSGALVASVVSGGPAEKAGLRRGDIIVRYNGSAVNNPNDLIELVGGTA 359 Query: 240 VGDKITLNVVRDGK 253 VG ++ + +R G+ Sbjct: 360 VGSQVEIEFIRGGE 373 >C1TA76.1 C1TA76_9FIRM Trypsin-like serine protease with C-terminal PDZ domain Length = 379 Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 113/266 (42%), Positives = 157/266 (59%), Gaps = 11/266 (4%) Query: 1 LTNQHVVDNADVIQVTVDGNTKPYEAKLLGYSKDLDLAVLKIE-GKNFPTVQLGDSDSIK 59 LTN+HV+D A I+V +D + P AKL+G KDLDLAVLKIE K+ P ++LG+SD+ + Sbjct: 122 LTNEHVIDGASKIEVLLDNDKNPLTAKLVGKDKDLDLAVLKIEPTKDLPVLKLGNSDNTR 181 Query: 60 VGSEVVAIGNPQGFDHTXXXXVLSAKNRSIDINEEDGSGTRNYKNLLQTDASIXXXXXXX 119 V VVAIGNP G DHT V+SAK+R +DI + R+YKNLLQTDASI Sbjct: 182 VADWVVAIGNPYGLDHTVTVGVVSAKSRPVDIED------RHYKNLLQTDASINPGNSGG 235 Query: 120 XXXXXXXQVIGMNVAVSTDSQGIGFAIAVNTIKEVVDKLEANQEIPKEPVPFIGASLMTI 179 +VIG+N A++ +QGIGFAI NT++ V++ LE Q P++G S+ + Sbjct: 236 PLLNLKGEVIGINTAINASAQGIGFAIPSNTVQAVLNDLETGQ----LKHPWLGVSVQAL 291 Query: 180 TDEVAKQMGTDIKEGSVVAEIIFKSPAYTADLRPYDIITGANGKKYATSQDLITYIQTLK 239 T E+A +G +G++V + PA A L+ D+I N + Q LI +Q K Sbjct: 292 TQELADALGLQNTQGALVGSVSSGGPAEKAGLQRGDVIIKYNDTQIDNEQKLIDCVQKSK 351 Query: 240 VGDKITLNVVRDGKTLELPVTIGNKN 265 VGD + VVR+ + L TI +KN Sbjct: 352 VGDTAVMVVVRNKNNIFLTATIEDKN 377 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.131 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,463,636,034 Number of extensions: 56213180 Number of successful extensions: 133023 Number of sequences better than 1.0e-05: 3365 Number of HSP's gapped: 122071 Number of HSP's successfully gapped: 3370 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 130 (54.7 bits)