BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0020.p (425 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB79.1 B3KB79_9BACI Phospho-2-dehydro-3-deoxyheptonate aldolase 592 e-167 B1DDH8.1 B1DDH8_9BACL Phospho-2-dehydro-3-deoxyheptonate aldolase 576 e-162 C0BBE2.1 C0BBE2_9FIRM Putative uncharacterized protein 372 e-101 B0NBP6.1 B0NBP6_EUBSP Putative uncharacterized protein 371 e-101 C1SLX2.1 C1SLX2_9BACT 3-deoxy-D-arabinoheptulosonate-7-phosphate... 363 1e-98 >B3KB79.1 B3KB79_9BACI Phospho-2-dehydro-3-deoxyheptonate aldolase Length = 351 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 284/320 (88%), Positives = 303/320 (94%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 MIVITSNQ +EQV I+ IEKEGLQ H+S+GAD TVIGL+G V PKLAEHLRQMKGVE Sbjct: 1 MIVITSNQISEEQVQHIVTEIEKEGLQAHVSKGADRTVIGLIGSVNPKLAEHLRQMKGVE 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 NVVKISKSYKLASRDFHP+DTVIDI+G KIGG NLV+MGGPCAVES +QIDEIA+LVKA+ Sbjct: 61 NVVKISKSYKLASRDFHPDDTVIDIKGTKIGGGNLVVMGGPCAVESAQQIDEIAQLVKAA 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 GGQVLRGGAFKPRTGPYSFQGVGVEGL MMAEAG++HGLLTITEVMTPEYVDICAE+ADI Sbjct: 121 GGQVLRGGAFKPRTGPYSFQGVGVEGLIMMAEAGQKHGLLTITEVMTPEYVDICAEYADI 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 LQVGTRNMQNFDLLRKLGTCG+PVLLKRGFSATYDE LNAAEYILAGGN +VMLCERGIR Sbjct: 181 LQVGTRNMQNFDLLRKLGTCGKPVLLKRGFSATYDEFLNAAEYILAGGNPNVMLCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDLSAIPVLQ LSHLPVISDPSHGTGRRELVEPM+KASVAAGA+GLIIEMH Sbjct: 241 TFETYTRNTLDLSAIPVLQGLSHLPVISDPSHGTGRRELVEPMSKASVAAGADGLIIEMH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 TDPDNSMTGDGVQSLFP+QF Sbjct: 301 TDPDNSMTGDGVQSLFPDQF 320 >B1DDH8.1 B1DDH8_9BACL Phospho-2-dehydro-3-deoxyheptonate aldolase Length = 353 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/320 (86%), Positives = 298/320 (93%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 MIVITS +E++ EI+ IE+ G+Q H+SRG D TVIG++G P LAEHLRQMKGVE Sbjct: 1 MIVITSPHIAEERIQEIVNHIERAGVQAHVSRGTDRTVIGIIGKAEPTLAEHLRQMKGVE 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 NV+KISKSYKLASRDFHP+DTVIDI+GVKIGG+NLVIMGGPCAVESPEQIDEIAR+VKA+ Sbjct: 61 NVIKISKSYKLASRDFHPDDTVIDIKGVKIGGDNLVIMGGPCAVESPEQIDEIARIVKAA 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 GGQVLRGGAFKPRTGPYSFQGVGVEGL MMAEAGK+HGLLTITEVMTPEYVD+CAEHADI Sbjct: 121 GGQVLRGGAFKPRTGPYSFQGVGVEGLIMMAEAGKKHGLLTITEVMTPEYVDVCAEHADI 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 LQVGTRNMQNFDLLRKLGT PVLLKRGFS+TYDE LNAAEYILAGGN +VMLCERGIR Sbjct: 181 LQVGTRNMQNFDLLRKLGTIQTPVLLKRGFSSTYDEFLNAAEYILAGGNPNVMLCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDLSAIPVLQ LSHLPVISDPSHGTGRRELVEPM+KASVAAGANGLI+EMH Sbjct: 241 TFETYTRNTLDLSAIPVLQGLSHLPVISDPSHGTGRRELVEPMSKASVAAGANGLIVEMH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 TDPDNSMTGDGVQSLFP+QF Sbjct: 301 TDPDNSMTGDGVQSLFPDQF 320 >C0BBE2.1 C0BBE2_9FIRM Putative uncharacterized protein Length = 337 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/323 (55%), Positives = 242/323 (74%), Gaps = 7/323 (2%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGG---VTPKLAEHLRQMK 65 MI++ +T E V + ++ +GL+VH +G D T+IG +G V PKL E Sbjct: 1 MIIVLKPRTSDENVKRVENMVRAKGLEVHTVKGEDLTIIGCIGDTVRVDPKLFE---VDS 57 Query: 66 GVENVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLV 125 VE V+ + + YKL +R FHP+DT++D+ GVK+GG +L ++ GPC+VES EQ+ EIA+ V Sbjct: 58 SVEKVMHVQEPYKLVNRAFHPDDTIVDVSGVKVGGGHLALIAGPCSVESEEQVIEIAKAV 117 Query: 126 KASGGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEH 185 KASG +LRGGAFKPRT PYSFQG+G+EGL ++ A + GL +TE+M+PEY++I E Sbjct: 118 KASGANMLRGGAFKPRTSPYSFQGLGLEGLEILCAAREETGLPIVTELMSPEYLEIFDEK 177 Query: 186 ADILQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCER 245 D++Q+G RNMQN+DLL++LG RP+LLKRG +ATY+E + +AEYI+A GN +V+LCER Sbjct: 178 VDLIQIGARNMQNYDLLKQLGQTKRPILLKRGLNATYEEWMMSAEYIMASGNPNVILCER 237 Query: 246 GIRTFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLII 305 GIRTFETYTRNTLDL +IPV++ LSHLPV+ DPSH G+ LV+PMAKASVAAGA+GLII Sbjct: 238 GIRTFETYTRNTLDLQSIPVVRKLSHLPVVVDPSHAGGKWWLVDPMAKASVAAGADGLII 297 Query: 306 EMHTDPDNSMTGDGVQSLFPEQF 328 E+H P+ ++ DG QSL PE++ Sbjct: 298 EVHNSPETALC-DGAQSLKPEKY 319 >B0NBP6.1 B0NBP6_EUBSP Putative uncharacterized protein Length = 340 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 171/320 (53%), Positives = 239/320 (74%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 MI++ +T +E + + +I++ GL H+ G + T+IG +G T ++ V+ Sbjct: 4 MIIVLKPRTTKEDITRVEQMIKRRGLDTHIVEGQEVTIIGCIGDTTKIDSKPFEVDSSVD 63 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 V+ + + YKLA+R FHPED++ID+ GVK+GG NL ++ GPC+VES +Q+ EIA+ KAS Sbjct: 64 KVMHVQEPYKLANRAFHPEDSIIDVSGVKVGGGNLALIAGPCSVESYDQVLEIAKAAKAS 123 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G +LRGGAFKPRT PYSFQG+G+EGL ++ E K GL +TE+M+PE++D+ E D+ Sbjct: 124 GANLLRGGAFKPRTSPYSFQGLGLEGLNILCEVKKAVGLPIVTELMSPEHLDVFNEKVDL 183 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 +Q+G RNMQNFDLL++LG RP+LLKRG +ATY+E + +AEYI+A GN +V+LCERGIR Sbjct: 184 IQIGARNMQNFDLLKQLGQVDRPILLKRGLNATYEEWMMSAEYIMASGNENVILCERGIR 243 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDL +IPVL+ L+HLPVI DPSH G+ LVE MAKAS+AAGA+GL++E+H Sbjct: 244 TFETYTRNTLDLQSIPVLRKLTHLPVIVDPSHAGGKWWLVESMAKASIAAGADGLMVEVH 303 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 P+N++ DG QSL P ++ Sbjct: 304 NAPENALC-DGAQSLKPRKY 322 >C1SLX2.1 C1SLX2_9BACT 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase EC=2.5.1.54 Length = 339 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 172/320 (53%), Positives = 234/320 (73%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 MI++ T +E + + +E G +VHLS G + T++G +G + + L GVE Sbjct: 1 MIIVFKKGTEKENIANVQKKLESYGFKVHLSEGVETTIMGAIGDESTLRDKPLSSFPGVE 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 VV I K YKL S+DF EDTVID++G+K+GG N+V+M GPC+VE + + EIA + Sbjct: 61 KVVPIVKPYKLVSKDFRKEDTVIDVKGIKLGGGNVVVMAGPCSVEGRDMLFEIAGRASKA 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G ++LRGGAFKPRT PY+FQG+G EGL + EA HG+L ITE+M P +D+ ++ DI Sbjct: 121 GAKILRGGAFKPRTSPYAFQGLGEEGLKYLREAADAHGMLVITELMDPRDIDLICKYTDI 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 +Q+G RNMQNF LLR LG +PV+LKRG AT ELL AAEY+ AGGN +++LCERGIR Sbjct: 181 IQIGARNMQNFRLLRDLGELRKPVMLKRGLCATMKELLMAAEYVAAGGNNEIILCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFET TRNTLDLSAIPVL++L+HLPV++DPSHGTGRR+ + PM++A+VAAGA+G+I+E+H Sbjct: 241 TFETETRNTLDLSAIPVLKSLTHLPVVADPSHGTGRRDCILPMSQAAVAAGADGIIVEVH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 P+ +M+ DG QS+ P+ F Sbjct: 301 NCPEEAMS-DGDQSILPDDF 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,448,488,249 Number of extensions: 101099625 Number of successful extensions: 244481 Number of sequences better than 1.0e-05: 1581 Number of HSP's gapped: 242869 Number of HSP's successfully gapped: 1584 Length of query: 425 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 287 Effective length of database: 1,760,596,133 Effective search space: 505291090171 Effective search space used: 505291090171 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)