BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0019.p (474 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB80.1 B3KB80_9BACI Glutamine synthetase EC=6.3.1.2 874 0.0 B1DDH7.1 B1DDH7_9BACL Glutamine synthetase EC=6.3.1.2 830 0.0 C0ZL75.1 C0ZL75_BREBN Glutamine synthetase EC=6.3.1.2 696 0.0 B7DPR5.1 B7DPR5_9BACL Glutamine synthetase EC=6.3.1.2 668 0.0 C1PT65.1 C1PT65_ALIAC L-glutamine synthetase EC=6.3.1.2 667 0.0 >B3KB80.1 B3KB80_9BACI Glutamine synthetase EC=6.3.1.2 Length = 474 Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/474 (86%), Positives = 448/474 (94%) Query: 1 MSVEKVLQTIKENNIEWVDFRFVDLGGRAHHISLPASAVDEETFVNGVAFDGSSITGFRG 60 MSVEKVLQTIKENNIEWVDFRFVDL GR HHISLPAS VDEETFVNGVAFDGSSI GFRG Sbjct: 1 MSVEKVLQTIKENNIEWVDFRFVDLSGRVHHISLPASEVDEETFVNGVAFDGSSIPGFRG 60 Query: 61 IEESDMVMMPDPGTIYIDPFTAHPTLNIMCDIFTPDGERYERDPRGIAVKAEEFLQASGV 120 IEESDMVMMPDP + YIDPFTAHPTLNIM +I+TP+G+ YERDPRGIA +AE++LQ +G+ Sbjct: 61 IEESDMVMMPDPVSCYIDPFTAHPTLNIMSNIYTPEGDAYERDPRGIAARAEQYLQEAGI 120 Query: 121 GTAAFFAPESEFFIFDDVRYESGMNSSSYFVDSEEAVWNTNRKDEGGNLAFKVGVKGGYV 180 GTAAFFAPESEFF+FD+VRYES MNSSSYFVDSEEA WNTNRK+EGGNL FKVGVKGGYV Sbjct: 121 GTAAFFAPESEFFLFDEVRYESSMNSSSYFVDSEEAQWNTNRKEEGGNLGFKVGVKGGYV 180 Query: 181 PVAPVDSQQDIRSEMCRLLSEAGLEIERHHHEVATAGQAEINFRFDTLKKTADNLLTYKY 240 PVAPVD+QQDIRSEMCRLL EAGL +ERHHHEVATAGQAEINFRFDTLKKTADNLL YKY Sbjct: 181 PVAPVDTQQDIRSEMCRLLDEAGLRVERHHHEVATAGQAEINFRFDTLKKTADNLLIYKY 240 Query: 241 IVQNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFNGDSPLFYEKGAYANLSEMALNYIG 300 IV NTARQYGK ATFMPKPLFGDNGSGMHVHQSIF+GD+PLFYEKGAYANLSE AL+YIG Sbjct: 241 IVHNTARQYGKTATFMPKPLFGDNGSGMHVHQSIFDGDTPLFYEKGAYANLSETALHYIG 300 Query: 301 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF 360 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF Sbjct: 301 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF 360 Query: 361 RTPDSTANPYLAFSAMLMAGLDGIKKKINPVELGYGPLDKNIYELADEDKEKIRSVPGTL 420 RTPDSTANPYLAFSAMLMAGLDGIK+KI+P LGYGP DKNIYEL+D +K++IRSVPG+L Sbjct: 361 RTPDSTANPYLAFSAMLMAGLDGIKRKIDPTALGYGPFDKNIYELSDAEKKEIRSVPGSL 420 Query: 421 EEALDSLEADYEFLTEGGVFTKDFIDNYIALKRSEAQAVAIRVHPHEYSLYFDV 474 +EALD+L+ADYEFLTEGGVFT++F++N+I KR+EA+AV IRVHPHEYSLY+D+ Sbjct: 421 DEALDALQADYEFLTEGGVFTQEFLENFIDFKRAEAKAVNIRVHPHEYSLYYDI 474 >B1DDH7.1 B1DDH7_9BACL Glutamine synthetase EC=6.3.1.2 Length = 474 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/472 (81%), Positives = 435/472 (92%) Query: 1 MSVEKVLQTIKENNIEWVDFRFVDLGGRAHHISLPASAVDEETFVNGVAFDGSSITGFRG 60 MSV+KVL+ I+ENNI++VDFRFVDL GRAHHI+LP++ VD +TFVNGVAFDGSSI GFRG Sbjct: 1 MSVQKVLEQIQENNIQFVDFRFVDLAGRAHHITLPSTEVDADTFVNGVAFDGSSIPGFRG 60 Query: 61 IEESDMVMMPDPGTIYIDPFTAHPTLNIMCDIFTPDGERYERDPRGIAVKAEEFLQASGV 120 IEESDMVMMPD ++DPFT HPTLNIMC+I TPDGERYERDPR IA KAEE+LQ +G+ Sbjct: 61 IEESDMVMMPDTDAAFVDPFTDHPTLNIMCNIHTPDGERYERDPRSIAQKAEEYLQTTGI 120 Query: 121 GTAAFFAPESEFFIFDDVRYESGMNSSSYFVDSEEAVWNTNRKDEGGNLAFKVGVKGGYV 180 GT AFFAPESEFFIFD+VRYES MNSSS++VDSEEA WNTNRK+EGGNL FKV VKGGYV Sbjct: 121 GTTAFFAPESEFFIFDEVRYESTMNSSSFYVDSEEAGWNTNRKEEGGNLGFKVPVKGGYV 180 Query: 181 PVAPVDSQQDIRSEMCRLLSEAGLEIERHHHEVATAGQAEINFRFDTLKKTADNLLTYKY 240 PVAPVD QQDIRSEM RL+ E GL +ERHHHEVATAGQAEINFRFDTL KTADNL+ YKY Sbjct: 181 PVAPVDQQQDIRSEMVRLMQEVGLRVERHHHEVATAGQAEINFRFDTLTKTADNLMLYKY 240 Query: 241 IVQNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFNGDSPLFYEKGAYANLSEMALNYIG 300 IV NTARQYGKVATFMPKPLFGDNGSGMHVH SIF+GD+P+FYEKGAY NLS +A+NYIG Sbjct: 241 IVHNTARQYGKVATFMPKPLFGDNGSGMHVHMSIFDGDAPMFYEKGAYGNLSPLAMNYIG 300 Query: 301 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF 360 G+L+HAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIP+A+VTPKGCRIEF Sbjct: 301 GVLHHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPIASVTPKGCRIEF 360 Query: 361 RTPDSTANPYLAFSAMLMAGLDGIKKKINPVELGYGPLDKNIYELADEDKEKIRSVPGTL 420 RTPDSTANPYLAF+AML+AGLDGIK+K++PV LGYGP DKNIYEL +E+K++IRSVPGTL Sbjct: 361 RTPDSTANPYLAFAAMLLAGLDGIKRKLDPVALGYGPFDKNIYELPEEEKKEIRSVPGTL 420 Query: 421 EEALDSLEADYEFLTEGGVFTKDFIDNYIALKRSEAQAVAIRVHPHEYSLYF 472 +EALD+LEAD FLTE GVFT+DFI NY+A+KRSEA+AV+IR+HPHEYSLYF Sbjct: 421 DEALDALEADSTFLTESGVFTEDFIANYVAVKRSEAKAVSIRIHPHEYSLYF 472 >C0ZL75.1 C0ZL75_BREBN Glutamine synthetase EC=6.3.1.2 Length = 470 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/472 (69%), Positives = 390/472 (82%), Gaps = 2/472 (0%) Query: 3 VEKVLQTIKENNIEWVDFRFVDLGGRAHHISLPASAVDEETFVNGVAFDGSSITGFRGIE 62 ++ VL TI E +E+VDFR VDL GR HH+++PA AVDE TF NGVAFDGSS+ G++ IE Sbjct: 1 MKTVLSTIDEEKVEYVDFRIVDLLGRQHHVTVPAYAVDEGTFCNGVAFDGSSLIGYKSIE 60 Query: 63 ESDMVMMPDPGTIYIDPFTAHPTLNIMCDIFTPDGERYERDPRGIAVKAEEFLQASGVGT 122 ESDMV MPDP T +IDPF T+NI+C+I PD Y RDPRGIA+KAE +LQ SG+ T Sbjct: 61 ESDMVAMPDPATAFIDPFVEAKTMNIICNIVNPDNTVYTRDPRGIALKAEAYLQQSGLAT 120 Query: 123 AAFFAPESEFFIFDDVRYESGMNSSSYFVDSEEAVWNTNRKDEGGNLAFKVGVKGGYVPV 182 AA+F PESEFF+FD+VRY SG + S + +DSEEA WNT + EG NL +KV KGGY PV Sbjct: 121 AAYFGPESEFFLFDNVRYASGPSGSFFHIDSEEAFWNTGK--EGQNLGYKVRNKGGYFPV 178 Query: 183 APVDSQQDIRSEMCRLLSEAGLEIERHHHEVATAGQAEINFRFDTLKKTADNLLTYKYIV 242 P DSQ DIR+EMC L+++ GL +ERHHHEVATAGQ EINFRFDTL +TADNLL +KYIV Sbjct: 179 QPTDSQMDIRNEMCTLMTKCGLHVERHHHEVATAGQGEINFRFDTLTRTADNLLLFKYIV 238 Query: 243 QNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFNGDSPLFYEKGAYANLSEMALNYIGGI 302 +N A ++GK ATFMPKP+ GDNGSGMHVHQS+FNGD+PLFYE+G YANLSE AL+YIGGI Sbjct: 239 RNVAAKHGKTATFMPKPIVGDNGSGMHVHQSLFNGDTPLFYEQGGYANLSETALHYIGGI 298 Query: 303 LYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEFRT 362 L+HAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIP+AAVTPK RIEFRT Sbjct: 299 LHHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPIAAVTPKASRIEFRT 358 Query: 363 PDSTANPYLAFSAMLMAGLDGIKKKINPVELGYGPLDKNIYELADEDKEKIRSVPGTLEE 422 PDSTANPYLAF+AMLMAGLDGIK+K+NP ELG+GP+DKNIY+L+D +K +I+S P +L E Sbjct: 359 PDSTANPYLAFAAMLMAGLDGIKRKLNPRELGFGPMDKNIYDLSDAEKHEIKSAPASLAE 418 Query: 423 ALDSLEADYEFLTEGGVFTKDFIDNYIALKRSEAQAVAIRVHPHEYSLYFDV 474 AL +LE D++FL EG VFTK+ I+ +IA KR E + V V+P EY LY+D+ Sbjct: 419 ALVALEQDHDFLLEGNVFTKEVIEGWIAQKRGEIEQVERTVNPKEYELYYDL 470 >B7DPR5.1 B7DPR5_9BACL Glutamine synthetase EC=6.3.1.2 Length = 473 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/475 (65%), Positives = 390/475 (82%), Gaps = 3/475 (0%) Query: 1 MSVEKVLQTIKENNIEWVDFRFVDLGGRAHHISLPASAVDEETFVNGVAFDGSSITGFRG 60 M+ +L+ +K++ ++ VDFR VD+ GR HH+++PA+ +DEE GVAFDGSS+ GFRG Sbjct: 1 MTPRDILELMKQHEVQMVDFRIVDVPGRQHHVTVPAAEIDEEVLERGVAFDGSSVPGFRG 60 Query: 61 IEESDMVMMPDPGTIYIDPFTAHPTLNIMCDIFTPDGERYERDPRGIAVKAEEFLQASGV 120 IEESDMVM P T ++DPFT PTL + C+++ P G RYERDPR IA KAE++L+++G+ Sbjct: 61 IEESDMVMRPVLETAFLDPFTEVPTLAVTCNVYEPGGNRYERDPRYIAEKAEQYLKSTGI 120 Query: 121 GTAAFFAPESEFFIFDDVRYESGMNSSSYFVDSEEAVWNTNRKDEGGNLAFKVGVKGGYV 180 T A+F PE EFFIFDDVR++S + + Y +DSEEAVWNT ++ NL + V K GY Sbjct: 121 ATTAYFGPELEFFIFDDVRFDSTQSGAFYAIDSEEAVWNTGTGEK--NLGYHVKNKSGYF 178 Query: 181 PVAPVDSQQDIRSEMCRLLSEAGLEIERHHHEVATAGQAEINFRFDTLKKTADNLLTYKY 240 PVAP D+QQDIR+EM L +AG+ +ERHHHEVATAGQAEINFRF TL +TAD ++TYKY Sbjct: 179 PVAPTDTQQDIRTEMVLELMKAGIRVERHHHEVATAGQAEINFRFGTLTRTADTVMTYKY 238 Query: 241 IVQNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFNGDSPLFYEKGAYANLSEMALNYIG 300 IV+N AR++GK ATFMPKP+FGDNGSGMHVHQS+FNGD PLFY +G YANLSE+AL YI Sbjct: 239 IVRNVARRHGKTATFMPKPIFGDNGSGMHVHQSLFNGDEPLFYREGGYANLSEIALQYIA 298 Query: 301 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF 360 GILYHAPA++A +NPSTNS+KRLVPGYEAPVNLVFS+GNRSAA+R+PVA V+PK RIEF Sbjct: 299 GILYHAPAILAFSNPSTNSYKRLVPGYEAPVNLVFSRGNRSAAIRVPVAVVSPKTARIEF 358 Query: 361 RTPDSTANPYLAFSAMLMAGLDGIKKKINPVELGYGPLDKNIYELADEDKEKIRSVPGTL 420 RTPD TANPYLAF+AMLMAGLDGI++K++P ELG+GP++KNIYEL+ E+K +I+SVPG+L Sbjct: 359 RTPDCTANPYLAFAAMLMAGLDGIRRKLDPTELGFGPINKNIYELSAEEKAQIKSVPGSL 418 Query: 421 EEALDSLEADYEFLTEGGVFTKDFIDNYIALKR-SEAQAVAIRVHPHEYSLYFDV 474 E LD+LEAD+EFL EGGVFTKDFI N+I KR +E + +R HP+E+SLYFD+ Sbjct: 419 GEVLDALEADHEFLLEGGVFTKDFIRNWIDFKRNNELAPLHLRPHPYEFSLYFDL 473 >C1PT65.1 C1PT65_ALIAC L-glutamine synthetase EC=6.3.1.2 Length = 473 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/475 (65%), Positives = 389/475 (81%), Gaps = 3/475 (0%) Query: 1 MSVEKVLQTIKENNIEWVDFRFVDLGGRAHHISLPASAVDEETFVNGVAFDGSSITGFRG 60 M+ +L+ +K++ ++ VDFR VD+ GR HH+++PA+ +DEE GVAFDGSS+ GFRG Sbjct: 1 MTPRDILELMKQHEVQMVDFRIVDVPGRQHHVTVPAAEIDEEVLERGVAFDGSSVPGFRG 60 Query: 61 IEESDMVMMPDPGTIYIDPFTAHPTLNIMCDIFTPDGERYERDPRGIAVKAEEFLQASGV 120 IEESDMVM P T ++DPFT PTL + C+++ P G RYERDPR IA KAE++L+++G+ Sbjct: 61 IEESDMVMRPVLETAFLDPFTEVPTLAVTCNVYEPSGNRYERDPRYIAEKAEQYLKSTGI 120 Query: 121 GTAAFFAPESEFFIFDDVRYESGMNSSSYFVDSEEAVWNTNRKDEGGNLAFKVGVKGGYV 180 T A+F PE EFFIFDDVR++S + + Y +DSEEAVWNT + NL + V K GY Sbjct: 121 ATTAYFGPELEFFIFDDVRFDSTQSGAFYAIDSEEAVWNTGTGVK--NLGYHVKNKSGYF 178 Query: 181 PVAPVDSQQDIRSEMCRLLSEAGLEIERHHHEVATAGQAEINFRFDTLKKTADNLLTYKY 240 PVAP D+QQDIR+EM L +AG+ +ERHHHEVATAGQAEINFRF TL +TAD ++TYKY Sbjct: 179 PVAPTDTQQDIRTEMVLELMKAGIRVERHHHEVATAGQAEINFRFGTLTRTADTVMTYKY 238 Query: 241 IVQNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFNGDSPLFYEKGAYANLSEMALNYIG 300 IV+N AR++GK ATFMPKP+FGDNGSGMHVHQS+FNGD PLFY +G YANLSE+AL YI Sbjct: 239 IVRNVARRHGKTATFMPKPIFGDNGSGMHVHQSLFNGDEPLFYREGGYANLSEIALQYIA 298 Query: 301 GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF 360 GILYHAPA++A +NPSTNS+KRLVPGYEAPVNLVFS+GNRSAA+R+PVA V+PK RIEF Sbjct: 299 GILYHAPAILAFSNPSTNSYKRLVPGYEAPVNLVFSRGNRSAAIRVPVAVVSPKTARIEF 358 Query: 361 RTPDSTANPYLAFSAMLMAGLDGIKKKINPVELGYGPLDKNIYELADEDKEKIRSVPGTL 420 RTPD TANPYLAF+AMLMAGLDGI++K++P ELG+GP++KNIYEL+ E+K +I+SVPG+L Sbjct: 359 RTPDCTANPYLAFAAMLMAGLDGIRRKLDPTELGFGPINKNIYELSAEEKAQIKSVPGSL 418 Query: 421 EEALDSLEADYEFLTEGGVFTKDFIDNYIALKR-SEAQAVAIRVHPHEYSLYFDV 474 E LD+LEAD+EFL EGGVFTKDFI N+I KR +E + +R HP+E+SLYFD+ Sbjct: 419 GEVLDALEADHEFLLEGGVFTKDFIRNWIDFKRNNELAPLHLRPHPYEFSLYFDL 473 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,968,114,564 Number of extensions: 132694186 Number of successful extensions: 313122 Number of sequences better than 1.0e-05: 3507 Number of HSP's gapped: 302148 Number of HSP's successfully gapped: 3611 Length of query: 474 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 334 Effective length of database: 1,741,754,103 Effective search space: 581745870402 Effective search space used: 581745870402 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)