BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0017.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1P8I2.1 C1P8I2_BACCO Transcriptional regulator, DeoR family 193 6e-48 A0AG50.1 A0AG50_LISW6 Complete genome 190 6e-47 A6LQL1.1 A6LQL1_CLOB8 Transcriptional regulator, DeoR family 160 4e-38 B7AY24.1 B7AY24_9FIRM Putative uncharacterized protein 160 5e-38 C0EHS0.1 C0EHS0_9CLOT Putative uncharacterized protein 157 4e-37 >C1P8I2.1 C1P8I2_BACCO Transcriptional regulator, DeoR family Length = 268 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 91/179 (50%), Positives = 127/179 (70%) Query: 1 VNIEAKRAIAESVLDLINDGDSLMTDTSSTAFEALKKITEAKKNLTIITNSLVVLSEFQH 60 VN+EAK+ IA + LI+DG++++ D SST EALK++ K+ L ++TNS + LSE Sbjct: 90 VNMEAKQNIAGKLQPLISDGNTIVADASSTVLEALKELNRTKEGLVVLTNSAIALSELAQ 149 Query: 61 SGHKLISTGGVLGAETNSFVGPSASHTIQRYNVDAALFSCKALSMTGGLSDSNEAESELK 120 S +L+STGG L +NS VG A H +++YNVD ALFSCK +SM G++DSNEAES +K Sbjct: 150 SNIQLLSTGGALRKRSNSLVGSVAEHAVRQYNVDVALFSCKGISMVRGITDSNEAESHIK 209 Query: 121 ILMRQQASKAVLLADHSKFDRIAFVRLFSFDEIDYIVTDGKPSDEWISFLNKYQVSLLH 179 M +QA+K +LLAD SKFD+IAFV F +D++VTD KPSDEW+ F +QV +++ Sbjct: 210 KEMLKQANKVILLADKSKFDKIAFVHFADFSAVDFVVTDEKPSDEWLRFFKDHQVDIVY 268 >A0AG50.1 A0AG50_LISW6 Complete genome Length = 255 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 131/178 (73%) Query: 1 VNIEAKRAIAESVLDLINDGDSLMTDTSSTAFEALKKITEAKKNLTIITNSLVVLSEFQH 60 +NIEAK+ IA + +L++DGD++M DTSST E+LK+I K +T+ITNS++ L EF + Sbjct: 77 INIEAKKNIASKMNELLHDGDTIMADTSSTVLESLKEIQLQKSKITLITNSIIALQEFSN 136 Query: 61 SGHKLISTGGVLGAETNSFVGPSASHTIQRYNVDAALFSCKALSMTGGLSDSNEAESELK 120 S +ISTGG L ++ S VG ++ T++ YN D AL SCK+LSMT G++DSN+ E +LK Sbjct: 137 SSFTIISTGGELRTKSMSLVGTVSASTVEHYNADIALLSCKSLSMTHGITDSNDPEGDLK 196 Query: 121 ILMRQQASKAVLLADHSKFDRIAFVRLFSFDEIDYIVTDGKPSDEWISFLNKYQVSLL 178 M ++A+K +LLADH+KFD++AFV++ +FD+I+ I+TD KPS EW+ FL + L+ Sbjct: 197 RNMAKKATKVILLADHTKFDKVAFVKIMNFDQINCIITDQKPSKEWLEFLTSKSIELI 254 >A6LQL1.1 A6LQL1_CLOB8 Transcriptional regulator, DeoR family Length = 252 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 2 NIEAKRAIAESVLDLINDGDSLMTDTSSTAFEALKKITEAKKNLTIITNSLVVLSEFQHS 61 NIE+K+ IA ++ + +++ D SST FEALK I + ++T+ITNS+ VL E S Sbjct: 76 NIESKQYIALKAIEFVKGSSTIVADCSSTVFEALKLI-RNRNDVTVITNSVEVLQELNQS 134 Query: 62 GHKLISTGGVLGAETNSFVGPSASHTIQRYNVDAALFSCKALSMTGGLSDSNEAESELKI 121 +ISTGG L T S GP + I+ YNVD A SCK + + G+ DSNE E+E+K Sbjct: 135 ELNIISTGGGLDQRTLSLQGPITQNAIKNYNVDIAFVSCKGMDINKGILDSNETEAEIKR 194 Query: 122 LMRQQASKAVLLADHSKFDRIAFVRLFSFDEIDYIVTDGKPSDEWISFLNKYQVSLLH 179 M +Q++K +LL DHSK+D+ +FV+LF +++IDY++TD +P++EWI+ L+ V +++ Sbjct: 195 SMIKQSNKVILLVDHSKYDKTSFVKLFDYEDIDYLITDIEPNEEWINLLHANNVEVIY 252 >B7AY24.1 B7AY24_9FIRM Putative uncharacterized protein Length = 251 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 1 VNIEAKRAIAESVLDLINDGDSLMTDTSSTAFEALKKITEAKKNLTIITNSLVVLSEFQH 60 +N E K AIAE LI DGD++M D+S+T +AL + + +K++TIITNS+ ++++F Sbjct: 74 INSEIKLAIAEKAARLIQDGDTIMMDSSTTC-QALLQRLKGQKDITIITNSIRLMNDFMG 132 Query: 61 SGHKLISTGGVLGAETNSFVGPSASHTIQRYNVDAALFSCKALSMTGGLSDSNEAESELK 120 SG K+I TGG + + + G AS T+++Y VD A SCK + G+ +SNE+E +K Sbjct: 133 SGFKMICTGGTMRESSCALTGSIASQTLEKYFVDFAFISCKGIDREKGIMESNESEGRIK 192 Query: 121 ILMRQQASKAVLLADHSKFDRIAFVRLFSFDEIDYIVTDGKPSDEWISFLNKYQVSLL 178 +M +QA KAVLL DHSKFD+ AFV+ F +D +VTD PS+EW S+LN ++L+ Sbjct: 193 SIMIRQARKAVLLIDHSKFDKTAFVKCDDFTHLDTLVTDEAPSEEWQSYLNDCHINLI 250 >C0EHS0.1 C0EHS0_9CLOT Putative uncharacterized protein Length = 262 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 2 NIEAKRAIAESVLDLINDGDSLMTDTSSTAFEALKKITEAKKNLTIITNSLVVLSEFQHS 61 N E KR IA ++LI + ++ TD SSTA E L K+ + +++LT+ TNS L EF S Sbjct: 86 NAEEKRYIAARAVELIEEQMTIGTDCSSTAME-LVKLIQNREDLTLFTNSSEALREFSQS 144 Query: 62 GHKLISTGGVLGAETNSFVGPSASHTIQRYNVDAALFSCKALSMTGGLSDSNEAESELKI 121 ++STGG+ ++ S G A I+ YNVD A SCK ++M GL D+ EAE+ELK Sbjct: 145 EIHILSTGGIFNRKSLSLQGTIAKSAIKSYNVDIAFISCKGINMEKGLLDTYEAEAELKT 204 Query: 122 LMRQQASKAVLLADHSKFDRIAFVRLFSFDEIDYIVTDGKPSDEWISFLNKYQVSLLH 179 + +QASK LL DHSKFDR AF++ + ++DY+VTD KPS EW+ F K + +++ Sbjct: 205 ALVEQASKVALLVDHSKFDRTAFIKFIDYSDLDYVVTDQKPSKEWLDFFQKRAIQIIY 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 958,426,281 Number of extensions: 32995929 Number of successful extensions: 104130 Number of sequences better than 1.0e-05: 3173 Number of HSP's gapped: 102717 Number of HSP's successfully gapped: 3173 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)