BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0013.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJN9.1 B3KJN9_9BACI Monovalent cation/proton antiporter, MnhG/...   108   2e-22
Q5WJX3.1 Q5WJX3_BACSK Multiple resistance and pH regulation rela...    79   1e-13
B1HXJ6.1 B1HXJ6_LYSSC Na(+)/H(+) antiporter subunit G (Multiple ...    74   6e-12
Q9RGY9.1 MRPG_BACPF Na(+)/H(+) antiporter subunit G                    72   2e-11
Q2B2S6.1 Q2B2S6_9BACI Na(+):H(+) antiporter                            69   1e-10

>B3KJN9.1 B3KJN9_9BACI Monovalent cation/proton antiporter, MnhG/PhaG subunit
          Length = 131

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
           +L GAFL+F FY+E VS KLL+ IVFVFIT PVAGHLNGRAAYRSGV +W+ SV DDLKP
Sbjct: 51  ILAGAFLYFTFYLEHVSAKLLLGIVFVFITGPVAGHLNGRAAYRSGVSMWEKSVHDDLKP 110

Query: 61  VLEKNKTKQDDSQ 73
            L++ + +  DS+
Sbjct: 111 ALKRERERMRDSR 123


>Q5WJX3.1 Q5WJX3_BACSK Multiple resistance and pH regulation related protein
           MrpG
          Length = 130

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 50/68 (73%)

Query: 2   LTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKPV 61
           LTG F++F+     +SI+L++ IVFVF+T+PVAGHL  RAAYRS VPL + SV+D+LK V
Sbjct: 54  LTGCFIYFWLADAYISIRLILGIVFVFLTAPVAGHLITRAAYRSKVPLTEESVEDELKEV 113

Query: 62  LEKNKTKQ 69
           L K    +
Sbjct: 114 LNKENYNE 121


>B1HXJ6.1 B1HXJ6_LYSSC Na(+)/H(+) antiporter subunit G (Multiple resistance
           and pH homeostasis protein G) (Mrp complex subunit G)
          Length = 116

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
            L G F++F+ +   VS++L++ I+FVF+T+PVAGHL  RAAYRS VPL +GS +D+LK 
Sbjct: 48  CLLGTFIYFWVHDGYVSVRLILGILFVFVTAPVAGHLICRAAYRSHVPLAEGSGEDELKD 107

Query: 61  VL--EKNK 66
            L  EKNK
Sbjct: 108 KLFTEKNK 115


>Q9RGY9.1 MRPG_BACPF Na(+)/H(+) antiporter subunit G
          Length = 119

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
           ++   FLFF+        KLL+ I+FVF+T+PVAG + GR+AYR GVPLW+ S QDDLK 
Sbjct: 50  IMLATFLFFFLVHGEFVGKLLLTILFVFLTAPVAGMMMGRSAYRVGVPLWEKSTQDDLKK 109

Query: 61  VLEKN 65
           + EK 
Sbjct: 110 MYEKK 114


>Q2B2S6.1 Q2B2S6_9BACI Na(+):H(+) antiporter
          Length = 123

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLK 59
           +L G FL+FY      + +L++ IVF+F+TSPVAGHL  RAAY +GVPL   SVQDDLK
Sbjct: 51  ILLGTFLYFYAEEGHFNSRLILGIVFIFMTSPVAGHLISRAAYNAGVPLADVSVQDDLK 109


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 426,384,820
Number of extensions: 14109588
Number of successful extensions: 49093
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 49096
Number of HSP's successfully gapped: 34
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)