BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0012.p
         (97 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJP0.1 B3KJP0_9BACI Multiple resistance and pH regulation prot...    99   1e-19
A6CRP1.1 A6CRP1_9BACI MrpF                                             83   1e-14
Q24PS2.1 Q24PS2_DESHY Na(+)/H(+) antiporter subunit F                  82   1e-14
B8G102.1 B8G102_DESHD Multiple resistance and pH regulation prot...    81   2e-14
B7GL96.1 B7GL96_ANOFW Multisubunit Na+/H+ antiporter, F subunit        79   2e-13

>B3KJP0.1 B3KJP0_9BACI Multiple resistance and pH regulation protein F
          Length = 97

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 61/76 (80%)

Query: 22 YRLIQGPTRSDRVAALDTIGIHLLAVIAVLGMQQRTEDYFDMVLVIGILTFIGTAALARY 81
          YRLI+GP+ +DR+ +LDTIGI LL++IAVL M  RT  YFD++L+IGILTFIGT ALARY
Sbjct: 22 YRLIKGPSMNDRIMSLDTIGIILLSMIAVLCMLFRTTVYFDIILLIGILTFIGTTALARY 81

Query: 82 IERDAVMEHGGDKLDR 97
          IER  V+E   D+ DR
Sbjct: 82 IERGDVIERTNDESDR 97


>A6CRP1.1 A6CRP1_9BACI MrpF
          Length = 94

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 56/72 (77%)

Query: 22 YRLIQGPTRSDRVAALDTIGIHLLAVIAVLGMQQRTEDYFDMVLVIGILTFIGTAALARY 81
          YR+I GPT  DRV ALD +G++L+A+IA++ M Q ++ + +++L+IGIL FIGT A +++
Sbjct: 22 YRVIVGPTTPDRVVALDALGVNLIAIIALVSMVQHSKSFLEVILLIGILAFIGTVAFSKF 81

Query: 82 IERDAVMEHGGD 93
          +E+ A++EH  D
Sbjct: 82 LEKGAIIEHDRD 93


>Q24PS2.1 Q24PS2_DESHY Na(+)/H(+) antiporter subunit F
          Length = 98

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 53/68 (77%)

Query: 22 YRLIQGPTRSDRVAALDTIGIHLLAVIAVLGMQQRTEDYFDMVLVIGILTFIGTAALARY 81
          YR ++GPT SDRV ALD +GI+++A +AV  +  RT  +F+++L+IGIL+FIGT A AR+
Sbjct: 26 YRCLKGPTASDRVQALDVLGINIIAAVAVFSVFLRTTAFFEVILLIGILSFIGTIAFARF 85

Query: 82 IERDAVME 89
          IER  V+E
Sbjct: 86 IERGIVIE 93


>B8G102.1 B8G102_DESHD Multiple resistance and pH regulation protein F
          Length = 98

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 53/68 (77%)

Query: 22 YRLIQGPTRSDRVAALDTIGIHLLAVIAVLGMQQRTEDYFDMVLVIGILTFIGTAALARY 81
          YR ++GPT SDRV ALD +GI+++A +A+  +  RT  +F+++L+IGIL+FIGT A AR+
Sbjct: 26 YRCLKGPTASDRVQALDVLGINIIASVAIFSVLLRTTAFFEVILLIGILSFIGTIAFARF 85

Query: 82 IERDAVME 89
          IER  V+E
Sbjct: 86 IERGIVIE 93


>B7GL96.1 B7GL96_ANOFW Multisubunit Na+/H+ antiporter, F subunit
          Length = 91

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 53/73 (72%)

Query: 22 YRLIQGPTRSDRVAALDTIGIHLLAVIAVLGMQQRTEDYFDMVLVIGILTFIGTAALARY 81
          YR+++GP+ +DR+ ALD +GI L  ++A++ M   T  + D++L+IGIL F+GT A A++
Sbjct: 19 YRVVKGPSTADRIIALDAMGITLAGIVAIVSMLLNTSAFLDVILLIGILAFVGTVAFAKF 78

Query: 82 IERDAVMEHGGDK 94
          +E+  V+E G D+
Sbjct: 79 LEKGVVIERGNDR 91


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.144    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 413,988,995
Number of extensions: 12901603
Number of successful extensions: 47454
Number of sequences better than 1.0e-05: 219
Number of HSP's gapped: 47458
Number of HSP's successfully gapped: 219
Length of query: 97
Length of database: 3,060,696,203
Length adjustment: 66
Effective length of query: 31
Effective length of database: 2,438,909,213
Effective search space: 75606185603
Effective search space used: 75606185603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)