BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0011.p (161 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJP1.1 B3KJP1_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 189 8e-47 Q8EPU2.1 Q8EPU2_OCEIH Na(+):H(+) antiporter 173 5e-42 B1HXD2.1 B1HXD2_LYSSC Na(+)/H(+) antiporter subunit E (Multiple ... 170 3e-41 Q9KD99.1 Q9KD99_BACHD Na+/H+ antiporter 162 1e-38 Q65FI4.1 Q65FI4_BACLD MrpE 155 1e-36 >B3KJP1.1 B3KJP1_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 159 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 99/158 (62%), Positives = 122/158 (77%) Query: 3 MAVQILLNLMTAFLWMMLSGDGSGSGFVIGYLLGCGILLVLRRFLPEPLYLKRVWSIVKL 62 M QILLN++ A +WM L+ + S F++GYL+G ++ +LRRF P YL+++WSI+ L Sbjct: 1 MGHQILLNIIIAIVWMFLNNNWSPQQFIVGYLIGILLIYMLRRFWPNDFYLRKLWSILML 60 Query: 63 LALFLRELVWSSFAVIRQILSPKLAVRPGIFAYETALRSDFEVTLLSCLICLTPGTLTLE 122 L LFL EL SS VI QI+ PKL VRPGIFAY T L+SD+E+T+LSCLICLTPGTLTLE Sbjct: 61 LLLFLSELFKSSVTVIGQIIRPKLNVRPGIFAYSTELKSDWEITVLSCLICLTPGTLTLE 120 Query: 123 VSGSGRTLYIHAMDIEDAGQLSRQIEGTFEKAIMEVTR 160 VS G+TLYIHAMDIED +LS QI GTFE+AI EVTR Sbjct: 121 VSREGQTLYIHAMDIEDVEELSNQIRGTFERAIKEVTR 158 >Q8EPU2.1 Q8EPU2_OCEIH Na(+):H(+) antiporter Length = 158 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 77/158 (48%), Positives = 113/158 (71%) Query: 3 MAVQILLNLMTAFLWMMLSGDGSGSGFVIGYLLGCGILLVLRRFLPEPLYLKRVWSIVKL 62 M QILLN++ AFLWM L D + FV+GYL+G +L +RRFL Y KRVW+ +KL Sbjct: 1 MPFQILLNVLIAFLWMFLQNDYTAITFVVGYLIGILLLFFIRRFLKSEFYFKRVWAAIKL 60 Query: 63 LALFLRELVWSSFAVIRQILSPKLAVRPGIFAYETALRSDFEVTLLSCLICLTPGTLTLE 122 + LFL+EL+ ++ V+R +LSPKL PGI A ET L ++ E++LL+ LI LTPGT++++ Sbjct: 61 IFLFLKELIKANIDVVRIVLSPKLNNEPGIVAVETKLETNLEISLLAALITLTPGTVSMD 120 Query: 123 VSGSGRTLYIHAMDIEDAGQLSRQIEGTFEKAIMEVTR 160 S +T+Y+HA+D+ D ++ R ++ TFE+AIMEVT+ Sbjct: 121 FSPDSKTIYVHAIDVPDREEVIRDVQNTFERAIMEVTK 158 >B1HXD2.1 B1HXD2_LYSSC Na(+)/H(+) antiporter subunit E (Multiple resistance and pH homeostasis protein E) (Mrp complex subunit E) Length = 159 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%) Query: 3 MAVQILLNLMTAFLWMMLSGDGSGSGFVIGYLLGCGILLVLRRFLPEPLYLKRVWSIVKL 62 MA Q++LN + AF+WM LS + + +GF+IG+L+G +L+++RRF LY+ R+W+I+KL Sbjct: 1 MAFQMILNFVLAFVWMFLSSNYTATGFIIGFLMGIILLIIMRRFFKSRLYVYRLWAILKL 60 Query: 63 LALFLRELVWSSFAVIRQILSPKLAVRPGIFAYETALRSDFEVTLLSCLICLTPGTLTLE 122 +LF +ELV ++ V++ +L PKL ++P FAY T L D+E+TLLS LI LTPGT+ + Sbjct: 61 TSLFFKELVLANVQVLKVVLKPKLDMQPAFFAYPTVLTEDWEITLLSSLITLTPGTVVVH 120 Query: 123 VSGSGRTLYIHAMDIEDAGQLSRQIEGTFEKAIMEVTR 160 VS +TLY+HA+DI D + I +FEKAI+EV++ Sbjct: 121 VSDDAKTLYVHAIDINDVDEAVASIRDSFEKAILEVSK 158 >Q9KD99.1 Q9KD99_BACHD Na+/H+ antiporter Length = 158 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 113/157 (71%) Query: 3 MAVQILLNLMTAFLWMMLSGDGSGSGFVIGYLLGCGILLVLRRFLPEPLYLKRVWSIVKL 62 MA+QILLNL+ A +WM L + + F++GY++G GIL+ LRRF+ LY ++VW+ +KL Sbjct: 1 MALQILLNLVIAIIWMFLQNSFTFADFLVGYVVGIGILIALRRFMIFDLYFRKVWAWIKL 60 Query: 63 LALFLRELVWSSFAVIRQILSPKLAVRPGIFAYETALRSDFEVTLLSCLICLTPGTLTLE 122 + LF +ELV ++ V + +LSPKL + PGI A T L+SD+E+TLL+ LI LTPGTL+++ Sbjct: 61 IVLFFKELVLANIDVTKIVLSPKLDITPGIVAVPTKLKSDWELTLLAGLISLTPGTLSMD 120 Query: 123 VSGSGRTLYIHAMDIEDAGQLSRQIEGTFEKAIMEVT 159 S + +YIH++ + D + R+I TFEKAI+EVT Sbjct: 121 FSDDKKYIYIHSIHVPDKEAMIREIHDTFEKAILEVT 157 >Q65FI4.1 Q65FI4_BACLD MrpE Length = 158 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/158 (48%), Positives = 115/158 (72%) Query: 3 MAVQILLNLMTAFLWMMLSGDGSGSGFVIGYLLGCGILLVLRRFLPEPLYLKRVWSIVKL 62 MA+QILLN + A WM L+ D + +GFVIGY++G L ++RRF YL +W+IV+L Sbjct: 1 MALQILLNFILALCWMFLNNDYTAAGFVIGYVIGLFSLFLMRRFFRRRFYLINIWAIVRL 60 Query: 63 LALFLRELVWSSFAVIRQILSPKLAVRPGIFAYETALRSDFEVTLLSCLICLTPGTLTLE 122 L +F++ELV ++ +V++ ILSP+L +PGIFA++T L++D+E+T L+ LI LTPGTL ++ Sbjct: 61 LFIFIKELVLANVSVLKTILSPRLKNKPGIFAFKTDLKADWEITTLANLITLTPGTLVVD 120 Query: 123 VSGSGRTLYIHAMDIEDAGQLSRQIEGTFEKAIMEVTR 160 +S LYIHA+DI+DA + I +FE+AI EV+R Sbjct: 121 ISDDRSILYIHAVDIDDAEKAISDIRISFEEAIKEVSR 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 920,240,765 Number of extensions: 36292949 Number of successful extensions: 115083 Number of sequences better than 1.0e-05: 374 Number of HSP's gapped: 115013 Number of HSP's successfully gapped: 374 Length of query: 161 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 40 Effective length of database: 1,920,753,388 Effective search space: 76830135520 Effective search space used: 76830135520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)