BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0009.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJP3.1 B3KJP3_9BACI NADH-ubiquinone oxidoreductase chain 4L         127   3e-28
A6CRP4.1 A6CRP4_9BACI Putative uncharacterized protein                125   1e-27
A7Z875.1 A7Z875_BACA2 MrpC                                            122   1e-26
Q2B2T0.1 Q2B2T0_9BACI Putative uncharacterized protein                121   2e-26
Q9RGZ3.1 MRPC_BACPF Na(+)/H(+) antiporter subunit C                   120   6e-26

>B3KJP3.1 B3KJP3_9BACI NADH-ubiquinone oxidoreductase chain 4L
          Length = 112

 Score =  127 bits (320), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 78/107 (72%)

Query: 1   MEWMMALAVGILFTVGVYLILSKTLLRIVXXXXXXXXXXXXXXXXMAGLKKGAAPVLGGK 60
           ME  M+LA+GI+F VG+Y ILSK+LLRI+                M+ LK GAAP+LG +
Sbjct: 1   MELYMSLAIGIIFAVGIYQILSKSLLRIILGTSLLTHGVHLLLLTMSRLKTGAAPLLGEE 60

Query: 61  ADAYADPLPQALILTSIVISFGVTAFFFVLAYRAYQAHGTDEMDNVR 107
           A +Y DP+PQALILTSIVISFGVT+FFFVLAY+AYQ  GTD M+ +R
Sbjct: 61  ASSYVDPVPQALILTSIVISFGVTSFFFVLAYKAYQRLGTDNMEELR 107


>A6CRP4.1 A6CRP4_9BACI Putative uncharacterized protein
          Length = 113

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 77/110 (70%)

Query: 1   MEWMMALAVGILFTVGVYLILSKTLLRIVXXXXXXXXXXXXXXXXMAGLKKGAAPVLGGK 60
           ME +MA+ +GILFT  VYL+LSK+LLRI+                ++GLK GA P+LG  
Sbjct: 1   MEILMAVVIGILFTSAVYLMLSKSLLRIIIGTALLSHGAHLLLLSISGLKAGAPPLLGEH 60

Query: 61  ADAYADPLPQALILTSIVISFGVTAFFFVLAYRAYQAHGTDEMDNVREEE 110
           A  YADPLPQALILT+IVISFGVT+FF VLAYRAYQ  GTD +D +R  E
Sbjct: 61  AAEYADPLPQALILTAIVISFGVTSFFLVLAYRAYQELGTDNVDQMRGNE 110


>A7Z875.1 A7Z875_BACA2 MrpC
          Length = 113

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 76/111 (68%)

Query: 1   MEWMMALAVGILFTVGVYLILSKTLLRIVXXXXXXXXXXXXXXXXMAGLKKGAAPVLGGK 60
           ME +M++  GILF    YL+LSK+LLR++                M GLKKGA P+LGGK
Sbjct: 1   MEILMSVIAGILFMAATYLLLSKSLLRVIIGTALLSHGVHLLLLTMGGLKKGAPPILGGK 60

Query: 61  ADAYADPLPQALILTSIVISFGVTAFFFVLAYRAYQAHGTDEMDNVREEEQ 111
           + ++ DPLPQALILT+IVISFGVT+F  V+A+RAYQ   TD+MD +R  +Q
Sbjct: 61  STSFVDPLPQALILTAIVISFGVTSFLLVMAFRAYQELKTDDMDRMRGNDQ 111


>Q2B2T0.1 Q2B2T0_9BACI Putative uncharacterized protein
          Length = 113

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 76/110 (69%)

Query: 1   MEWMMALAVGILFTVGVYLILSKTLLRIVXXXXXXXXXXXXXXXXMAGLKKGAAPVLGGK 60
           ME +M++ +GILF    YL+LSK+LLRI+                M GLK+G  P+LG  
Sbjct: 1   MEILMSVLIGILFMSATYLMLSKSLLRIIIGTGLLSHGAHLLLITMGGLKRGNPPLLGEH 60

Query: 61  ADAYADPLPQALILTSIVISFGVTAFFFVLAYRAYQAHGTDEMDNVREEE 110
           A+ YADP+PQALILT+IVISFGVTAFF V+AYRAYQ  GTD M+ +R +E
Sbjct: 61  AEKYADPIPQALILTAIVISFGVTAFFLVMAYRAYQELGTDNMERLRGKE 110


>Q9RGZ3.1 MRPC_BACPF Na(+)/H(+) antiporter subunit C
          Length = 112

 Score =  120 bits (300), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 75/107 (70%)

Query: 1   MEWMMALAVGILFTVGVYLILSKTLLRIVXXXXXXXXXXXXXXXXMAGLKKGAAPVLGGK 60
           ME +M++  G+LF VG YLIL+K+LLR+V                MAGL++GA P+L  +
Sbjct: 1   MEILMSITAGVLFMVGTYLILTKSLLRVVVGLILLSHGAHLLLLTMAGLQRGAPPLLHLE 60

Query: 61  ADAYADPLPQALILTSIVISFGVTAFFFVLAYRAYQAHGTDEMDNVR 107
           A  Y+DPLPQALILT+IVISFGVT+F  VLAYR Y+ H TD++D +R
Sbjct: 61  ATTYSDPLPQALILTAIVISFGVTSFLLVLAYRTYKEHKTDDLDQLR 107


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 537,937,701
Number of extensions: 15730608
Number of successful extensions: 49982
Number of sequences better than 1.0e-05: 422
Number of HSP's gapped: 49615
Number of HSP's successfully gapped: 422
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)