BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0007.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K9A1.1 Q9K9A1_BACHD NAD(P)H oxidoreductase 273 6e-72 B1D5Z6.1 B1D5Z6_9BACL NAD(P)H dehydrogenase (Quinone) 261 3e-68 C2SAW2.1 C2SAW2_BACCE NADPH dehydrogenase, quinone 218 3e-55 C3GQW5.1 C3GQW5_BACTU NADPH dehydrogenase, quinone 218 3e-55 Q72YC6.1 Q72YC6_BACC1 NAD(P)H dehydrogenase, quinone family 218 3e-55 >Q9K9A1.1 Q9K9A1_BACHD NAD(P)H oxidoreductase Length = 198 Score = 273 bits (699), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 130/194 (67%), Positives = 153/194 (78%), Gaps = 1/194 (0%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 M HL++YAHP+ ES NHAI++T V ALKK GHEV+VRDLYAL FQPVL PED + M +G Sbjct: 1 MNHLIIYAHPHPESLNHAILDTAVHALKKNGHEVIVRDLYALHFQPVLTPEDISVMNAGD 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETG-VDKLLT 132 P DI TEQ++I ADV+TFIYPIWWTGLPAILKGY+DRVFSYGFAY GE G V ++LT Sbjct: 61 IPQDIKTEQEYITRADVITFIYPIWWTGLPAILKGYIDRVFSYGFAYEIGENGEVIRMLT 120 Query: 133 GKKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALD 192 GKKG IINT G PKE YD+IGMT GLKITSD+GIF F G+E +HLLFGS+ S + A Sbjct: 121 GKKGLIINTFGHPKENYDEIGMTNGLKITSDTGIFEFVGVEPTDHLLFGSVGSLNEEAYK 180 Query: 193 EILVQVEETVTSLF 206 +L +VEE V S+F Sbjct: 181 GMLKEVEERVHSIF 194 >B1D5Z6.1 B1D5Z6_9BACL NAD(P)H dehydrogenase (Quinone) Length = 193 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/193 (65%), Positives = 145/193 (75%), Gaps = 1/193 (0%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 M HL+VYAHP+ ESFNHAI++T V ALK+ GHEV VRDL L F PVL P DTAA+R G Sbjct: 1 MNHLIVYAHPHEESFNHAILDTAVNALKEGGHEVTVRDLNKLGFNPVLSPVDTAALREGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYG-ETGVDKLLT 132 PADI TEQ F+ AD +TFIYPIWWTGLPAI+KGYVDR FSYGFAY Y E G+DKL T Sbjct: 61 PPADIKTEQAFLEAADFITFIYPIWWTGLPAIIKGYVDRTFSYGFAYQYNSEGGIDKLFT 120 Query: 133 GKKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALD 192 GKKG +INT+GTP EIY+ IGM LK TS SGIF FTGIE+VE LFG + S A Sbjct: 121 GKKGILINTYGTPGEIYESIGMNNSLKQTSGSGIFEFTGIEVVEQFLFGGVSSVTDEARK 180 Query: 193 EILVQVEETVTSL 205 E+L QV++ +SL Sbjct: 181 EMLAQVDKKFSSL 193 >C2SAW2.1 C2SAW2_BACCE NADPH dehydrogenase, quinone Length = 218 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/195 (57%), Positives = 140/195 (71%) Query: 12 IKMKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRS 71 I MKH++VYAHPN ESFNHAI+ET L++KGHEV VRDLY L+F PVL D + Sbjct: 24 ITMKHVIVYAHPNTESFNHAILETVKNELEEKGHEVRVRDLYELNFNPVLGASDFISFSQ 83 Query: 72 GQTPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLL 131 G TPADI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL Sbjct: 84 GNTPADIKEEQEHISWADSITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLL 143 Query: 132 TGKKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAAL 191 +GKKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + Sbjct: 144 SGKKGLLLSTMGNTKEAYTAGGMFDAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVR 203 Query: 192 DEILVQVEETVTSLF 206 + L +V++ V F Sbjct: 204 KQYLEEVKDVVNRAF 218 >C3GQW5.1 C3GQW5_BACTU NADPH dehydrogenase, quinone Length = 193 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/193 (57%), Positives = 140/193 (72%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 MKH++VYAHPN ESFNHAI+ET + L++KGHEV VRDLY L+F PVL D + G Sbjct: 1 MKHVIVYAHPNTESFNHAILETVKKELEEKGHEVRVRDLYELNFNPVLGASDFISFSQGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 TPADI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL+G Sbjct: 61 TPADIKEEQEHISWADTITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLLSG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + + Sbjct: 121 KKGLLLSTMGNTKEAYTAGGMFDAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVRKQ 180 Query: 194 ILVQVEETVTSLF 206 L +V++ V F Sbjct: 181 YLEEVKDVVNRAF 193 >Q72YC6.1 Q72YC6_BACC1 NAD(P)H dehydrogenase, quinone family Length = 193 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/193 (57%), Positives = 140/193 (72%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 MKH++VYAHPN ESFNHAI+ET + L++KGHEV VRDLY L+F PVL D + G Sbjct: 1 MKHVIVYAHPNTESFNHAILETVKKELEEKGHEVRVRDLYELNFNPVLGASDFISFSQGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 TPADI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL+G Sbjct: 61 TPADIKEEQEHISWADSITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLLSG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + + Sbjct: 121 KKGLLLSTMGNTKEAYTAGGMFEAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVRKQ 180 Query: 194 ILVQVEETVTSLF 206 L +V++ V F Sbjct: 181 YLEEVKDVVNRAF 193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,198,691,523 Number of extensions: 49693625 Number of successful extensions: 121428 Number of sequences better than 1.0e-05: 944 Number of HSP's gapped: 120854 Number of HSP's successfully gapped: 945 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)