BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0005.p
         (145 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4J1A3.1 A4J1A3_DESRM Transcriptional regulator, MarR family          140   4e-32
B8GJ41.1 B8GJ41_METPE Transcriptional regulator, MarR family          138   1e-31
C1ZXD0.1 C1ZXD0_SULDE Transcriptional regulator                       119   1e-25
Q24RC1.1 Q24RC1_DESHY Putative uncharacterized protein                108   2e-22
B8FPX9.1 B8FPX9_DESHD Transcriptional regulator, MarR family          108   2e-22

>A4J1A3.1 A4J1A3_DESRM Transcriptional regulator, MarR family
          Length = 144

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 96/140 (68%)

Query: 6   MPNYNALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVH 65
           M   NALS+IS+IR +A K+I+ ELE  G+  IVPSHGD+L +LF  +  ++KELA K+H
Sbjct: 1   MRKGNALSIISRIREKATKLIIRELESHGVEGIVPSHGDILVILFHGEKFTMKELAAKIH 60

Query: 66  LTQPTVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGG 125
            T+PTVTVL+ KL + G+V++ K   DSRVT+IKLT K   LKP F +IS KLN  +YG 
Sbjct: 61  RTKPTVTVLIEKLVQYGFVEKEKSHTDSRVTYIKLTKKGFELKPIFDDISAKLNGILYGD 120

Query: 126 LNPGQREDLEFLLEHIYRRF 145
           L   + E LE LL  +  RF
Sbjct: 121 LTEEESEALERLLNDVNSRF 140


>B8GJ41.1 B8GJ41_METPE Transcriptional regulator, MarR family
          Length = 151

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 95/140 (67%)

Query: 6   MPNYNALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVH 65
           M   NA+S ISKIR EA++ I++EL++ G+  +VPSHGD+   LF ++  ++ +LA K+H
Sbjct: 1   MVTRNAVSQISKIREEANQFIITELKEHGVEGLVPSHGDIFYHLFFEERCTMNDLAEKIH 60

Query: 66  LTQPTVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGG 125
            T+PTVT+LVNKLE  GYV+R K   D RVT++ LTD    L+PAF+EIS+KLN  +YG 
Sbjct: 61  RTRPTVTILVNKLEACGYVERAKSETDGRVTYVTLTDSGRTLEPAFREISEKLNTIVYGD 120

Query: 126 LNPGQREDLEFLLEHIYRRF 145
           L+       E LL   Y RF
Sbjct: 121 LSDEDATFFEELLTSRYARF 140


>C1ZXD0.1 C1ZXD0_SULDE Transcriptional regulator
          Length = 144

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 86/134 (64%)

Query: 6   MPNYNALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVH 65
           M     ++L S++  +A++ I++E +K+ + DI PSHGD+L LLF  +   + E+A K+H
Sbjct: 1   MKKQRLIALSSRLAEKANQFIIAEFKKQELFDIAPSHGDILSLLFDGNAHEMSEIAKKIH 60

Query: 66  LTQPTVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGG 125
            T+PTVTVLV KLE+ GYV RIK   D+R T + LT K   L+P F+ IS+KLN   Y G
Sbjct: 61  RTKPTVTVLVEKLEKNGYVQRIKSESDARFTMVLLTQKGFKLQPMFEMISEKLNALAYFG 120

Query: 126 LNPGQREDLEFLLE 139
           L   +   LE LLE
Sbjct: 121 LRDEEAMLLEILLE 134


>Q24RC1.1 Q24RC1_DESHY Putative uncharacterized protein
          Length = 152

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 84/136 (61%)

Query: 10  NALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQP 69
           N ++L+S+I   A++ I++ELEKR I DI PSHG VL  LF+   L++ E+A +V+  + 
Sbjct: 16  NTINLMSRINERANRFILAELEKREITDIAPSHGAVLAALFRDSELTMSEIAQRVNRDRS 75

Query: 70  TVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPG 129
           TVT  VNKL   GY+  +K  +DSR T + LT K   L+PAF +IS  L    Y G++  
Sbjct: 76  TVTNSVNKLIDSGYLATMKNAQDSRSTLVFLTPKGRELEPAFFQISQSLAMLEYQGISAE 135

Query: 130 QREDLEFLLEHIYRRF 145
           +RE    +LE IY  F
Sbjct: 136 EREIFRKVLERIYMNF 151


>B8FPX9.1 B8FPX9_DESHD Transcriptional regulator, MarR family
          Length = 144

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 84/136 (61%)

Query: 10  NALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQP 69
           N ++L+S+I   A++ I++ELEKR I DI PSHG VL  LF+   L++ E+A +V+  + 
Sbjct: 8   NTINLMSRINERANRFILAELEKREITDIAPSHGAVLAALFRDSELTMSEIAQRVNRDRS 67

Query: 70  TVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPG 129
           TVT  VNKL   GY+  +K  +DSR T + LT K   L+PAF +IS  L    Y G++  
Sbjct: 68  TVTNSVNKLIDSGYLATMKNAQDSRSTLVFLTPKGRELEPAFFQISQSLAMLEYQGISAE 127

Query: 130 QREDLEFLLEHIYRRF 145
           +RE    +LE IY  F
Sbjct: 128 EREIFRKVLERIYMNF 143


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 804,895,931
Number of extensions: 29600551
Number of successful extensions: 112344
Number of sequences better than 1.0e-05: 232
Number of HSP's gapped: 112695
Number of HSP's successfully gapped: 232
Length of query: 145
Length of database: 3,060,696,203
Length adjustment: 108
Effective length of query: 37
Effective length of database: 2,043,226,583
Effective search space: 75599383571
Effective search space used: 75599383571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)