BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0539.0002.p
         (175 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLT6.1 B3KLT6_9BACI Putative uncharacterized protein                140   4e-32
C0ZKE8.1 C0ZKE8_BREBN Putative uncharacterized protein                 69   2e-10

>B3KLT6.1 B3KLT6_9BACI Putative uncharacterized protein
          Length = 160

 Score =  140 bits (353), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 89/137 (64%), Gaps = 2/137 (1%)

Query: 39  SQELTVYIHALKSKDGHTVMTADQIEWYEGAEADRIFAEREPDAAAELGGTPDGYYIVND 98
           S +   YI+ L+ KDG   +  D IEWYEG EA+++F ERE D   E+   PDGYYIVND
Sbjct: 26  SNQEAAYINGLEIKDGKVFLLVDPIEWYEGEEANQVFREREQDP--EMTEAPDGYYIVND 83

Query: 99  SDSLTSYPIADNAAVTMQIYDHTGHMEDLDINWNEHISLDKFISEFAKTGIIDLSQSPYH 158
           ++     P+AD+A V +Q+YDHTG  ED  I+WN+ +SL KF   + K  I+D+   P+H
Sbjct: 84  TEEHIELPVADDAEVLLQLYDHTGRYEDAQISWNQPVSLSKFADIYKKDDIVDMKWFPFH 143

Query: 159 ITIQAGKVTSIVQQYTP 175
           IT++ G V  I+QQY P
Sbjct: 144 ITVEDGVVVKIIQQYVP 160


>C0ZKE8.1 C0ZKE8_BREBN Putative uncharacterized protein
          Length = 179

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 8/147 (5%)

Query: 29  TRAEAQSGDKSQELTVYIHALKSKDGHTVMTADQIEWYEGAEADRIFAEREPDAAAELGG 88
           T ++ + G+  ++   Y+  L+ K+G  +++ D ++W+ G  A + + +  P   +E   
Sbjct: 41  TSSKDKQGNTLEKSMAYVKTLQVKNGKLLVSLDYVQWFFGEAAVKAYRQDHP---SEKED 97

Query: 89  TPDGYYIVNDSDSLTSYPIADNAAVTMQIYDHTGHMEDLDINWNEHISLDKFISEFAKTG 148
            P  YYI N S  + ++ ++  A+ T+Q        +D + +WNE ++ D F       G
Sbjct: 98  YPMPYYIRNSSPKIRTFEVSPKASFTLQT---NSTQKDGNFHWNEAVNTDTFKKFVLSKG 154

Query: 149 IIDLSQSPYHITIQAGKVTSIVQQYTP 175
           I    Q P+H+ ++ G +T + +QY P
Sbjct: 155 I--PYQIPFHVEVKNGIITKVTEQYVP 179


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 900,123,647
Number of extensions: 34601336
Number of successful extensions: 68675
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 68673
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 49
Effective length of database: 1,873,648,313
Effective search space: 91808767337
Effective search space used: 91808767337
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)