BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0022.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q893B1.1 Q893B1_CLOTE Sensor protein EC=2.7.13.3 541 e-152 C3KUZ9.1 C3KUZ9_CLOB6 Sensor protein ResE 516 e-145 B1QHX2.1 B1QHX2_CLOBO Sensor protein EC=2.7.13.3 516 e-145 B9E4D9.1 B9E4D9_CLOK1 Sensor protein EC=2.7.13.3 493 e-138 A5N0H8.1 A5N0H8_CLOK5 Sensor protein EC=2.7.13.3 493 e-138 >Q893B1.1 Q893B1_CLOTE Sensor protein EC=2.7.13.3 Length = 339 Score = 541 bits (1393), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/313 (84%), Positives = 276/313 (88%) Query: 1 MAAAAVMVGFAINTXXXXXXXXXXXXXXXXXXXXXXXRYKNIARISNQIDLVLHNADHLF 60 MAAAAVM+GFAIN RYK+IARIS QIDLVLHNADHL+ Sbjct: 27 MAAAAVMLGFAINAVAGILSIASVAAFGTAFFVFTKARYKSIARISEQIDLVLHNADHLY 86 Query: 61 IGESDEGELSILHSEITKMTLRIRDQNNALKKEKEHLADSLADIAHQLRTPLTSVNLILS 120 I ESDEGELSILHSEITKM LRIR+QN+ALKKEKEHLADSLADIAHQLRTPLTS NLILS Sbjct: 87 IDESDEGELSILHSEITKMMLRIREQNDALKKEKEHLADSLADIAHQLRTPLTSANLILS 146 Query: 121 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSVQIDVNHLINAAL 180 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQS QI+VN+LI AAL Sbjct: 147 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSEQINVNNLICAAL 206 Query: 181 RPFLIPMELHDIDLQIDAPEGMIIQGDSGWLSEAIQNILKNCMESTGENGKIEIVCTDNP 240 RPFLIPMELHDIDLQIDAP+GMIIQGDSGWLSEAIQNILKNC+ES GENGKIEIVCTDNP Sbjct: 207 RPFLIPMELHDIDLQIDAPKGMIIQGDSGWLSEAIQNILKNCVESAGENGKIEIVCTDNP 266 Query: 241 LFTEITIHDSGAGFEKEDLPSLFDRFYRGTNPNATGYGIGLSLCKMIITRQGGTITAKNH 300 LFTEI IHDSG GFEKEDLP LFDRFYRG NPNATGYGIGL+LCKMIITRQGG +T KNH Sbjct: 267 LFTEIAIHDSGTGFEKEDLPCLFDRFYRGKNPNATGYGIGLALCKMIITRQGGMVTTKNH 326 Query: 301 PQGGAIFAIRFPK 313 PQGGAIFAIRFPK Sbjct: 327 PQGGAIFAIRFPK 339 >C3KUZ9.1 C3KUZ9_CLOB6 Sensor protein ResE Length = 329 Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/313 (79%), Positives = 268/313 (85%) Query: 1 MAAAAVMVGFAINTXXXXXXXXXXXXXXXXXXXXXXXRYKNIARISNQIDLVLHNADHLF 60 +AA + +GFAIN RYK+IA+IS+QIDLVLHNADHL+ Sbjct: 17 IAATTITLGFAINRLGGILAIASASAFGTAFFAFTKARYKSIAQISDQIDLVLHNADHLY 76 Query: 61 IGESDEGELSILHSEITKMTLRIRDQNNALKKEKEHLADSLADIAHQLRTPLTSVNLILS 120 IGESDEGELSIL +EITKMT+RIR+QN+ALKKEKEHLADSLADIAHQLRTPLTS NLILS Sbjct: 77 IGESDEGELSILQTEITKMTMRIREQNDALKKEKEHLADSLADIAHQLRTPLTSANLILS 136 Query: 121 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSVQIDVNHLINAAL 180 LL N PDENERK +RETEEL V+MDWL+TSLLKLSRLDAGIVVFQ QIDVN LI+A+L Sbjct: 137 LLKNKPDENERKVLMRETEELFVQMDWLLTSLLKLSRLDAGIVVFQGEQIDVNTLISASL 196 Query: 181 RPFLIPMELHDIDLQIDAPEGMIIQGDSGWLSEAIQNILKNCMESTGENGKIEIVCTDNP 240 PFLIPMELHDIDLQIDAP+GMIIQGDSGWLSEAIQNILKNCMES GENGKIEIVCTDN Sbjct: 197 HPFLIPMELHDIDLQIDAPKGMIIQGDSGWLSEAIQNILKNCMESAGENGKIEIVCTDNS 256 Query: 241 LFTEITIHDSGAGFEKEDLPSLFDRFYRGTNPNATGYGIGLSLCKMIITRQGGTITAKNH 300 LFTEI IHDSG GFEKEDLP LFDRFYRG NPNATGYGIGL+LCKMIITRQGGTITAKNH Sbjct: 257 LFTEIAIHDSGMGFEKEDLPCLFDRFYRGKNPNATGYGIGLALCKMIITRQGGTITAKNH 316 Query: 301 PQGGAIFAIRFPK 313 PQGGAIF IRFPK Sbjct: 317 PQGGAIFTIRFPK 329 >B1QHX2.1 B1QHX2_CLOBO Sensor protein EC=2.7.13.3 Length = 329 Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/313 (79%), Positives = 268/313 (85%) Query: 1 MAAAAVMVGFAINTXXXXXXXXXXXXXXXXXXXXXXXRYKNIARISNQIDLVLHNADHLF 60 +AA + +GFAIN RYK+IA+IS+QIDLVLHNADHL+ Sbjct: 17 IAATTITLGFAINRLGGILAIASASAFGTAFFAFTKARYKSIAQISDQIDLVLHNADHLY 76 Query: 61 IGESDEGELSILHSEITKMTLRIRDQNNALKKEKEHLADSLADIAHQLRTPLTSVNLILS 120 IGESDEGELSIL +EITKMT+RIR+QN+ALKKEKEHLADSLADIAHQLRTPLTS NLILS Sbjct: 77 IGESDEGELSILQTEITKMTMRIREQNDALKKEKEHLADSLADIAHQLRTPLTSANLILS 136 Query: 121 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSVQIDVNHLINAAL 180 LL N PDENERK +RETEEL V+MDWL+TSLLKLSRLDAGIVVFQ QIDVN LI+A+L Sbjct: 137 LLKNKPDENERKVLMRETEELFVQMDWLLTSLLKLSRLDAGIVVFQGEQIDVNTLISASL 196 Query: 181 RPFLIPMELHDIDLQIDAPEGMIIQGDSGWLSEAIQNILKNCMESTGENGKIEIVCTDNP 240 PFLIPMELHDIDLQIDAP+GMIIQGDSGWLSEAIQNILKNCMES GENGKIEIVCTDN Sbjct: 197 HPFLIPMELHDIDLQIDAPKGMIIQGDSGWLSEAIQNILKNCMESAGENGKIEIVCTDNS 256 Query: 241 LFTEITIHDSGAGFEKEDLPSLFDRFYRGTNPNATGYGIGLSLCKMIITRQGGTITAKNH 300 LFTEI IHDSG GFEKEDLP LFDRFYRG NPNATGYGIGL+LCKMIITRQGGTITAKNH Sbjct: 257 LFTEIAIHDSGMGFEKEDLPCLFDRFYRGKNPNATGYGIGLALCKMIITRQGGTITAKNH 316 Query: 301 PQGGAIFAIRFPK 313 PQGGAIF IRFPK Sbjct: 317 PQGGAIFTIRFPK 329 >B9E4D9.1 B9E4D9_CLOK1 Sensor protein EC=2.7.13.3 Length = 329 Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/313 (77%), Positives = 264/313 (84%) Query: 1 MAAAAVMVGFAINTXXXXXXXXXXXXXXXXXXXXXXXRYKNIARISNQIDLVLHNADHLF 60 MAAAAV +GFAIN RYK+IA+IS+QIDLVLHNAD L+ Sbjct: 17 MAAAAVTLGFAINRLAGILAAASAAAFGTTFLAFTKARYKSIAQISDQIDLVLHNADRLY 76 Query: 61 IGESDEGELSILHSEITKMTLRIRDQNNALKKEKEHLADSLADIAHQLRTPLTSVNLILS 120 IGESDEGELSIL SEITKM LRIR+QN ALK+ KEHLA+SL DIAHQLRTPLTSVNLILS Sbjct: 77 IGESDEGELSILQSEITKMMLRIREQNYALKEGKEHLANSLTDIAHQLRTPLTSVNLILS 136 Query: 121 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSVQIDVNHLINAAL 180 LL NNPDENERKA +RET+EL V+MDWL+TSLLKLSRLDAGIVVFQS +IDVN LI +AL Sbjct: 137 LLENNPDENERKALIRETKELFVQMDWLLTSLLKLSRLDAGIVVFQSEKIDVNSLICSAL 196 Query: 181 RPFLIPMELHDIDLQIDAPEGMIIQGDSGWLSEAIQNILKNCMESTGENGKIEIVCTDNP 240 RPFLIPMELH IDLQI+AP+G+IIQGD GWLSEAIQNILKNC+ES GENGKIEIVC NP Sbjct: 197 RPFLIPMELHSIDLQINAPKGIIIQGDLGWLSEAIQNILKNCIESAGENGKIEIVCESNP 256 Query: 241 LFTEITIHDSGAGFEKEDLPSLFDRFYRGTNPNATGYGIGLSLCKMIITRQGGTITAKNH 300 LFTEI IHDSGAGF KEDLP LF+RFYRG N NATGYGIGL+LCKMIITRQGG ITAKNH Sbjct: 257 LFTEIAIHDSGAGFRKEDLPFLFNRFYRGKNSNATGYGIGLALCKMIITRQGGMITAKNH 316 Query: 301 PQGGAIFAIRFPK 313 QGGAIF+IRFPK Sbjct: 317 LQGGAIFSIRFPK 329 >A5N0H8.1 A5N0H8_CLOK5 Sensor protein EC=2.7.13.3 Length = 329 Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/313 (77%), Positives = 264/313 (84%) Query: 1 MAAAAVMVGFAINTXXXXXXXXXXXXXXXXXXXXXXXRYKNIARISNQIDLVLHNADHLF 60 MAAAAV +GFAIN RYK+IA+IS+QIDLVLHNAD L+ Sbjct: 17 MAAAAVTLGFAINRLAGILAAASAAAFGTTFLAFTKARYKSIAQISDQIDLVLHNADRLY 76 Query: 61 IGESDEGELSILHSEITKMTLRIRDQNNALKKEKEHLADSLADIAHQLRTPLTSVNLILS 120 IGESDEGELSIL SEITKM LRIR+QN ALK+ KEHLA+SL DIAHQLRTPLTSVNLILS Sbjct: 77 IGESDEGELSILQSEITKMMLRIREQNYALKEGKEHLANSLTDIAHQLRTPLTSVNLILS 136 Query: 121 LLANNPDENERKAFVRETEELLVRMDWLITSLLKLSRLDAGIVVFQSVQIDVNHLINAAL 180 LL NNPDENERKA +RET+EL V+MDWL+TSLLKLSRLDAGIVVFQS +IDVN LI +AL Sbjct: 137 LLENNPDENERKALIRETKELFVQMDWLLTSLLKLSRLDAGIVVFQSEKIDVNSLICSAL 196 Query: 181 RPFLIPMELHDIDLQIDAPEGMIIQGDSGWLSEAIQNILKNCMESTGENGKIEIVCTDNP 240 RPFLIPMELH IDLQI+AP+G+IIQGD GWLSEAIQNILKNC+ES GENGKIEIVC NP Sbjct: 197 RPFLIPMELHSIDLQINAPKGIIIQGDLGWLSEAIQNILKNCIESAGENGKIEIVCESNP 256 Query: 241 LFTEITIHDSGAGFEKEDLPSLFDRFYRGTNPNATGYGIGLSLCKMIITRQGGTITAKNH 300 LFTEI IHDSGAGF KEDLP LF+RFYRG N NATGYGIGL+LCKMIITRQGG ITAKNH Sbjct: 257 LFTEIAIHDSGAGFRKEDLPFLFNRFYRGKNSNATGYGIGLALCKMIITRQGGMITAKNH 316 Query: 301 PQGGAIFAIRFPK 313 QGGAIF+IRFPK Sbjct: 317 LQGGAIFSIRFPK 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,699,450,850 Number of extensions: 69302135 Number of successful extensions: 279328 Number of sequences better than 1.0e-05: 25726 Number of HSP's gapped: 247520 Number of HSP's successfully gapped: 25793 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)