BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0021.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4IBB8.1 C4IBB8_CLOBU Lipoprotein-releasing system ATP-binding p... 412 e-113 Q893B2.1 Q893B2_CLOTE ABC transporter ATP-binding protein 409 e-112 C3KUZ8.1 C3KUZ8_CLOB6 Lipoprotein-releasing system ATP-binding p... 408 e-112 B1QHX3.1 B1QHX3_CLOBO Dihydrodipicolinate synthase (Dhdps) EC=4.... 408 e-112 B0NEJ8.1 B0NEJ8_EUBSP Putative uncharacterized protein 396 e-109 >C4IBB8.1 C4IBB8_CLOBU Lipoprotein-releasing system ATP-binding protein LolD EC=3.6.3.- Length = 228 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/224 (88%), Positives = 215/224 (95%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFLKIENLCK+YGK ENQV ALD+VSLT+EKGEFTAIIGSSGSGKSTLLH I GVDVPT Sbjct: 1 MEFLKIENLCKVYGKGENQVNALDNVSLTIEKGEFTAIIGSSGSGKSTLLHAIAGVDVPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGK+YLEGQDVY Q+NEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKR+VN Sbjct: 61 SGKIYLEGQDVYGQNNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRRVNQN 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLNDLL+MLGL+DRKTHLPNQLSGGQQQRV+IGRALMNAPAVMLADEPTGSLDS+NGHEI Sbjct: 121 RLNDLLDMLGLKDRKTHLPNQLSGGQQQRVAIGRALMNAPAVMLADEPTGSLDSKNGHEI 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDER 224 I+LLKES++KY QTL++VTHDENIALQADRII I+DGKVVRDER Sbjct: 181 IQLLKESHKKYNQTLIIVTHDENIALQADRIICIADGKVVRDER 224 >Q893B2.1 Q893B2_CLOTE ABC transporter ATP-binding protein Length = 234 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/227 (92%), Positives = 220/227 (96%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFL+IENLCK+YGK ENQVTALDHVSLT+EKGEFTAIIGSSGSGKSTLLHII GVDVPT Sbjct: 8 MEFLRIENLCKVYGKGENQVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVPT 67 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYL+GQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVN E Sbjct: 68 SGKVYLDGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNEE 127 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLNDLL++LGL+DRK HLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI Sbjct: 128 RLNDLLDLLGLKDRKMHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 187 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVRP 227 I LLK SNQKY QTL++VTHDENIALQADRIIGISDGKVVRDERVRP Sbjct: 188 INLLKLSNQKYQQTLIVVTHDENIALQADRIIGISDGKVVRDERVRP 234 >C3KUZ8.1 C3KUZ8_CLOB6 Lipoprotein-releasing system ATP-binding protein LolD EC=3.6.3.- Length = 227 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/227 (92%), Positives = 221/227 (97%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFLK E+LCK+YGK ENQVTALDHVSLT+EKGEFTAIIGSSGSGKSTLLHII GVDVPT Sbjct: 1 MEFLKTEDLCKVYGKGENQVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYL+GQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVN E Sbjct: 61 SGKVYLDGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNEE 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLNDLLE+LGL+DR+THLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI Sbjct: 121 RLNDLLELLGLKDRRTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVRP 227 IKLLK S+++Y QTL++VTHDENIALQADRIIGISDGKVVRDERVRP Sbjct: 181 IKLLKLSHKQYQQTLIVVTHDENIALQADRIIGISDGKVVRDERVRP 227 >B1QHX3.1 B1QHX3_CLOBO Dihydrodipicolinate synthase (Dhdps) EC=4.2.1.52 Length = 227 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/227 (92%), Positives = 221/227 (97%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFLK E+LCK+YGK ENQVTALDHVSLT+EKGEFTAIIGSSGSGKSTLLHII GVDVPT Sbjct: 1 MEFLKTEDLCKVYGKGENQVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYL+GQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVN E Sbjct: 61 SGKVYLDGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNEE 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLNDLLE+LGL+DR+THLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI Sbjct: 121 RLNDLLELLGLKDRRTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVRP 227 IKLLK S+++Y QTL++VTHDENIALQADRIIGISDGKVVRDERVRP Sbjct: 181 IKLLKLSHKQYQQTLIVVTHDENIALQADRIIGISDGKVVRDERVRP 227 >B0NEJ8.1 B0NEJ8_EUBSP Putative uncharacterized protein Length = 235 Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/224 (90%), Positives = 213/224 (95%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFL++ENL K+YGK ENQVTALD VSLT+EKGEFTAIIGSSGSGKSTLLHII GVDVPT Sbjct: 8 MEFLRVENLYKVYGKGENQVTALDGVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVPT 67 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYL GQDVYAQ+NEKLAIFRRRQVGLIYQFHNLIPTLNVVEN+TLPILMDKRKVN E Sbjct: 68 SGKVYLNGQDVYAQNNEKLAIFRRRQVGLIYQFHNLIPTLNVVENMTLPILMDKRKVNKE 127 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RL DLL +LGL+ RK HLPNQLSGGQQQRV+IGRALMNAP VMLADEPTGSLDSRNGHEI Sbjct: 128 RLKDLLNLLGLEGRKNHLPNQLSGGQQQRVAIGRALMNAPQVMLADEPTGSLDSRNGHEI 187 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDER 224 IKLLKESN+KYGQTLLLVTHDENIALQADRIIGISDGKVVRDER Sbjct: 188 IKLLKESNKKYGQTLLLVTHDENIALQADRIIGISDGKVVRDER 231 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,320,603,815 Number of extensions: 55555715 Number of successful extensions: 492708 Number of sequences better than 1.0e-05: 96236 Number of HSP's gapped: 363921 Number of HSP's successfully gapped: 104994 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)