BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0018.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2G4H9.1 Q2G4H9_NOVAD NmrA-like protein 172 6e-41 Q1MEB8.1 Q1MEB8_RHIL3 Putative uncharacterized protein 144 9e-33 B9JGI9.1 B9JGI9_AGRRK Putative uncharacterized protein 144 1e-32 C3RPN9.1 C3RPN9_9MOLU Putative uncharacterized protein 143 2e-32 B0N4D7.1 B0N4D7_9FIRM Putative uncharacterized protein 143 2e-32 >Q2G4H9.1 Q2G4H9_NOVAD NmrA-like protein Length = 305 Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 13 RYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIPKDTVQRWENAGVTIFEINYDD 72 R ++TG G V + ++A+ +L K +++ Q G T+ ++D Sbjct: 3 RIVITGASGNYGRGVTDRLIAQGRAEDLILITRKPEKLADRAAQ-----GCTVRYGDFDK 57 Query: 73 IPSMERAFKDGDRIYIVSGLEVGRRVQQHKNAIDTAIKAGISHITYSSFIGATDP-NYAH 131 ++ A + +R+ ++SG VG RV QHK AID A AG++H+ Y+SFIG DP N A Sbjct: 58 PETLAEAVQGAERMLLISGTRVGARVVQHKAAIDAAAAAGVAHLVYTSFIGIDDPANPAE 117 Query: 132 VFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEGRATLV 191 V DH TE +K++G + +R+ Y + + M +M + KW + AGEGR +V Sbjct: 118 V--RHDHIETEALMKASGCAWTMLRDAHYADAMILMAG-PGVMQSGKWFSNAGEGREAMV 174 Query: 192 HKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNAEQYYE 251 +DDC L G+G + YNI G E + R++ ++ EV+GR +EY ++ E Y Sbjct: 175 WRDDCIESAVAVLTGEGHQGQVYNITGPELQTFREVAAMMAEVTGRPVEYVSLDDEGQYA 234 Query: 252 HLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKPKTARDI 311 + M IPR D + +P+ DD+VT +I+EG L + +D +E LTG+K ++ R + Sbjct: 235 MFDAMGIPRRPVDDSEVNGIPWNSDDMVTFGRAIREGFLELCTDDVERLTGRKARSVRQM 294 Query: 312 I 312 I Sbjct: 295 I 295 >Q1MEB8.1 Q1MEB8_RHIL3 Putative uncharacterized protein Length = 295 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 156/307 (50%), Gaps = 27/307 (8%) Query: 15 IVTGVDGQLASRVAETVLA--EVDGRNLTFTCMKKDRIPKDTVQRWENAGVTIFEINYDD 72 +VTG GQL RV ++ +V N+ +++ E GV + ++DD Sbjct: 6 LVTGAAGQLGQRVIHHLIETYKVAPGNIVAATRSPEKL-----SELEKKGVVTRKADFDD 60 Query: 73 IPSMERAFKDGDRIYIVS--GLEV-GRRVQQHKNAIDTAIKAGISHITYSSFIGATDPNY 129 +E+AF DR+ I+S L+ G+R+ QHK A+ A+K+G+ HI Y+S G P+ Sbjct: 61 AAGLEKAFAGVDRLLIISTDALDTPGKRLAQHKGAVAAAVKSGVKHIAYTSMPG---PDN 117 Query: 130 AHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEGRAT 189 + V PDH +EN +K++G+ + +R+ Y +NYL + M + KW + G+G+ + Sbjct: 118 SLVTFAPDHLGSENAIKASGIAHTIIRDAWYHDNYL--HGMPHNLQGGKWYSATGDGKIS 175 Query: 190 LVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNAEQY 249 + +DDC L ++ Y + G++S++ R + ++ +V+G+ LE V EQ Sbjct: 176 TISRDDCALAIAAALASGTSESATYTVTGTQSLNSRQIAAIVSDVAGKPLEVIDVTDEQL 235 Query: 250 YEHLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKPKTAR 309 + + +P F D LV+ DA+ + G ++ ++ LTG++P+ + Sbjct: 236 GQGMRGAGLPG------------FVADMLVSADANTRAGKFDIVTEDFTKLTGKQPQPLK 283 Query: 310 DIIGKYK 316 D ++K Sbjct: 284 DFFVEHK 290 >B9JGI9.1 B9JGI9_AGRRK Putative uncharacterized protein Length = 295 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 155/313 (49%), Gaps = 29/313 (9%) Query: 10 LNMRYIVTGVDGQLASRVAETVLAE---VDGRNLTFTCMKKDRIPKDTVQRWENAGVTIF 66 ++ +VTG GQL RV +L GR + T R P + + G+ Sbjct: 1 MSSTLLVTGAAGQLGQRVLHHLLETYKVAPGRIIAAT-----RSP-EKLADLAAKGIVTR 54 Query: 67 EINYDDIPSMERAFKDGDRIYIVS--GLEV-GRRVQQHKNAIDTAIKAGISHITYSSFIG 123 + ++DDI ++ AF DR+ I+S L V G R++Q A++ A KAG+ HI Y+S Sbjct: 55 KADFDDIAALPAAFAGVDRLLIISTDALAVPGLRLKQQTAAVEAAKKAGVKHILYTSMPA 114 Query: 124 ATDPNYAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTA 183 P+ + V PDH TEN +K++G+ Y +R+ Y +N+L + + KW T Sbjct: 115 ---PDGSLVSFAPDHLGTENAIKASGIGYTILRDAWYFDNFL--MGLPHSLETGKWYTAT 169 Query: 184 GEGRATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTP 243 G GR + + +DDC L ++ Y + GS S+++ D+ ++ +V+GR LE Sbjct: 170 GGGRTSNISRDDCALAIAAALASDTTESATYTLTGSTSLTIEDVAGVVSKVTGRPLEVVQ 229 Query: 244 VNAEQYYEHLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQ 303 VN EQ+ L +P+ F D LV+ DA+ + G ++ ++ LTG+ Sbjct: 230 VNDEQFAAGLTGAGLPK------------FVVDMLVSADANARAGKFDILTNDFNKLTGK 277 Query: 304 KPKTARDIIGKYK 316 +P+T R ++K Sbjct: 278 EPQTVRAFFEEHK 290 >C3RPN9.1 C3RPN9_9MOLU Putative uncharacterized protein Length = 311 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 158/318 (49%), Gaps = 30/318 (9%) Query: 13 RYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIP-KDTVQRWENAGVT--IFEIN 69 + IVTGVDG VA + + +L FTC P ++ ++ +++ G+ + N Sbjct: 3 KVIVTGVDGNFGGYVARNITQLKEKEDLIFTC------PFEEGLKEFKDTGIDCRVANFN 56 Query: 70 YDDIPSMERAFKDGDRIYIVSGLEVG-RRVQQHKNAIDTAIKAGISHITYSSFIGATD-- 126 + D +E AFK GD I I+S VG +R HKNAID AIKAG+ + Y+S + A D Sbjct: 57 HPDEQLVE-AFKGGDTILIISAPFVGAKRQAAHKNAIDAAIKAGVKKVVYTSLVNARDVE 115 Query: 127 -PNYAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGE 185 P+ + DH TE Y++ST + Y +RN+ Y E +T Y L SN L+ G+ Sbjct: 116 NPSIEKI----DHAWTEEYIESTELDYIFLRNSQYAEAMITSY----LTSNGNLLSCQGD 167 Query: 186 GRATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVN 245 G+ + + DC L + NI G E +++ + + +G D++ V+ Sbjct: 168 GKMAYISRLDCAMAAMYALTKDDMHKQVLNINGPELLTLHEFAAIGNRETGMDVKVVDVS 227 Query: 246 AEQYYEHLEKMHIPREITGDFS-CSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQK 304 E+ Y + + +PR G F SP P+ D +VT +I+ G ++ +D E LTG K Sbjct: 228 EEEVYAGFDAIGVPRTTDGAFKDGSPAPYSSDGMVTFARAIRIGKMDNFTDDFEKLTGVK 287 Query: 305 PKTARDIIGKYKYIWENN 322 P+T Y++ NN Sbjct: 288 PRTV-------AYMFANN 298 >B0N4D7.1 B0N4D7_9FIRM Putative uncharacterized protein Length = 316 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 158/318 (49%), Gaps = 30/318 (9%) Query: 13 RYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIP-KDTVQRWENAGVT--IFEIN 69 + IVTGVDG VA + + +L FTC P ++ ++ +++ G+ + N Sbjct: 8 KVIVTGVDGNFGGYVARNITQLKEKEDLIFTC------PFEEGLKEFKDTGIDCRVANFN 61 Query: 70 YDDIPSMERAFKDGDRIYIVSGLEVG-RRVQQHKNAIDTAIKAGISHITYSSFIGATD-- 126 + D +E AFK GD I I+S VG +R HKNAID AIKAG+ + Y+S + A D Sbjct: 62 HPDEQLVE-AFKGGDTILIISAPFVGAKRQAAHKNAIDAAIKAGVKKVVYTSLVNARDVE 120 Query: 127 -PNYAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGE 185 P+ + DH TE Y++ST + Y +RN+ Y E +T Y L SN L+ G+ Sbjct: 121 NPSIEKI----DHAWTEEYIESTELDYIFLRNSQYAEAMITSY----LTSNGNLLSCQGD 172 Query: 186 GRATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVN 245 G+ + + DC L + NI G E +++ + + +G D++ V+ Sbjct: 173 GKMAYISRLDCAMAAMYALTKDDMHKQVLNINGPELLTLHEFAAIGNRETGMDVKVVDVS 232 Query: 246 AEQYYEHLEKMHIPREITGDFS-CSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQK 304 E+ Y + + +PR G F SP P+ D +VT +I+ G ++ +D E LTG K Sbjct: 233 EEEVYAGFDAIGVPRTTDGTFKDGSPAPYSSDGMVTFARAIRIGKMDNFTDDFEKLTGVK 292 Query: 305 PKTARDIIGKYKYIWENN 322 P+T Y++ NN Sbjct: 293 PRTV-------AYMFANN 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,956,947,673 Number of extensions: 80369336 Number of successful extensions: 185432 Number of sequences better than 1.0e-05: 486 Number of HSP's gapped: 184725 Number of HSP's successfully gapped: 487 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)